Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0373
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28574| Best HMM Match : KE2 (HMM E-Value=1.2)                       31   0.50 
SB_49759| Best HMM Match : bZIP_1 (HMM E-Value=0.93)                   28   4.6  
SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)                 28   6.1  
SB_18858| Best HMM Match : WXG100 (HMM E-Value=0.65)                   28   6.1  

>SB_28574| Best HMM Match : KE2 (HMM E-Value=1.2)
          Length = 210

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 9   EKWKNRYEDAERKHKAYLLKSEKAKREHDDLQRRYNILHEERNHLDS 149
           E  K + E A  K K +L    +AK +H++L+  YN L ++ + L S
Sbjct: 77  EHKKTKAELASNK-KEFLFNVTRAKAQHEELELEYNRLQQQHSRLSS 122


>SB_49759| Best HMM Match : bZIP_1 (HMM E-Value=0.93)
          Length = 316

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 18  KNRYEDAERKHKAYLLKSEKAKREH--DDLQRRYNILHEERNHLDS 149
           KNR    ERK      ++   KR+     L+R+++ L EER  L+S
Sbjct: 226 KNRERSRERKSSGKSSETSSEKRDEVVHRLERKFSSLTEERKRLES 271


>SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 18  KNRYEDAERKHKAYLLKSEKAKREH--DDLQRRYNILHEERNHLDS 149
           KNR    ERK      ++   KR+     L+R+++ L EER  L+S
Sbjct: 756 KNRERSRERKSSGKSSENSSEKRDEVVHRLERKFSSLTEERKRLES 801


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 24   RYEDAERKHKAYLLKSEKAKREHDDLQRRYNILHEERN 137
            R ++AERK +    + E+ KR  ++++RR   + EE+N
Sbjct: 1224 RRKEAERKAEEKRKQIERQKRIDEEVERRLQKIAEEKN 1261


>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
          Length = 2084

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 30   EDAERKHKAYLLKSEKAKREHDDLQRRYNILHEERN 137
            E  E++  A L K  + + + DDL R+  ++  ERN
Sbjct: 1029 ESVEQERDAVLSKLREVEEQRDDLLRKGRMVESERN 1064


>SB_18858| Best HMM Match : WXG100 (HMM E-Value=0.65)
          Length = 222

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 18  KNRYEDAERKHKAYLLKSEKAKREHDDLQRRYNILHEER 134
           KN+ E    + + Y LK E+ +R H ++Q+R   L EER
Sbjct: 112 KNKREIQIAEAEKYKLKFEQEERLHREVQQREKELWEER 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,351,024
Number of Sequences: 59808
Number of extensions: 205855
Number of successful extensions: 682
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)