Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0373
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative s...    30   0.94 
At2g29990.1 68415.m03648 pyridine nucleotide-disulphide oxidored...    29   2.9  
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    28   3.8  
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    27   6.6  
At1g09770.1 68414.m01096 myb family transcription factor contain...    27   8.7  

>At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative
           similar to nuclear RNA binding protein GI:6492264 from
           [Arabidopsis thaliana]
          Length = 357

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = +3

Query: 30  EDAERKHKAYLLKSEKAKREHDDLQRRYNILHEERNHLDSXXXXXXXXXXXXXXVSEKLF 209
           ED   + K  L   EKA++E ++ + R   L E    L+               V  K+F
Sbjct: 203 EDETPEAKKELTAEEKAQKEAEEAEAREMTLEEYEKILEEKKKALQATKVEERKVDTKVF 262

Query: 210 NEYQQLKHQHEVD 248
              QQL ++   D
Sbjct: 263 ESMQQLSNKKNTD 275


>At2g29990.1 68415.m03648 pyridine nucleotide-disulphide
           oxidoreductase family protein similar to SP|P32340
           Rotenone-insensitive NADH-ubiquinone oxidoreductase,
           mitochondrial precursor (EC 1.6.5.3) (Internal NADH
           dehydrogenase) {Saccharomyces cerevisiae} ; contains
           Pfam profile PF00070: Pyridine nucleotide-disulphide
           oxidoreductase
          Length = 508

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = -3

Query: 264 LCMNPRR-----PRADASAAGTR*IAFRRHSSACSARVLSLVTPSPGGFFLRAKCCS-DA 103
           +C++PR      P   ++  GT  + FR  +   S R+   ++  PG FF  A C   DA
Sbjct: 98  VCVSPRNHMVFTPLLASTCVGT--LEFRSVAEPIS-RIQPAISREPGSFFFLANCSRLDA 154

Query: 102 GGHRAH 85
             H  H
Sbjct: 155 DAHEVH 160


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 342 KACISTVLRRLSCLFCLYHSPACCITL 262
           KAC + +L+ LSCL C Y     C TL
Sbjct: 396 KACGTEILKPLSCLVCEYALCIRCATL 422


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
            identical to DNA repair-recombination protein GI:7110148
            from [Arabidopsis thaliana]
          Length = 1316

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 6    VEKWKNRYEDAERKHKAYLLKSEKAKREHDDLQRRYNIL 122
            VE  + +Y+D +++H   L++ +  +  + DL R YN L
Sbjct: 1105 VELKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNAL 1143


>At1g09770.1 68414.m01096 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 844

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 272 QQAGEWYKQNKQLKRRSTVLMQALPVPP 355
           ++A E  +Q   LK+RS VL + LP PP
Sbjct: 520 EKAEEEARQQALLKKRSKVLQRDLPRPP 547


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,246,769
Number of Sequences: 28952
Number of extensions: 138183
Number of successful extensions: 507
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)