Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0371
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 37 0.003
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 29 0.68
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 29 0.68
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 27 2.7
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.8
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 6.3
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 6.3
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 6.3
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 25 8.3
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 8.3
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = +2
Query: 251 KGILLLKELFNSHPEGKRDYLFYLAIGNARIKEYNKALHYVKSFLEGGPGTQFAL 415
+G+ L ++ PE + + L+Y+A+ + ++K+Y ++ Y+ L P + AL
Sbjct: 61 QGLSLFCSIYKDSPERRLECLYYIALSHYKLKQYEESRRYLNMLLSKDPNSPEAL 115
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 507 HPLSPAGVIAKRPAPIAFPTVAQPEWR 587
HP+ P G A R P P +A+P +R
Sbjct: 321 HPIQPIGFPASRKTPTYVPPIARPYFR 347
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 28.7 bits (61), Expect = 0.68
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 34 IFLFVNVKYLIKVIIYSN-RLQWKTY*TRLFHRKICKNSR 150
++L VNV+ IK I+Y N L W + + + K+C+ R
Sbjct: 14 LYLMVNVQCRIKEIMYWNICLYWDVFSKLIIYNKVCQFGR 53
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 222 VRSKYPTDIRKESYFLKNCSTLILKANVTTFSTLP 326
+R YP D+ K ++L ST+ NV TLP
Sbjct: 169 LRKVYPEDVPKADWYLPFDSTIKSSHNVVLRKTLP 203
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 123 SSEDLQKFERVFHEQLHQGNVSHKAQFE 206
+ +++ E++ HEQL++ N K +FE
Sbjct: 162 NQREVESLEQLVHEQLNKLNTESKMEFE 189
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1
Query: 58 YLIKVIIYSNRLQWKTY*TRLFHRKICKNSRGSFMNNCIKGTFPTKPSL 204
YL K I + +R+ T + HR I RGSF N F T P L
Sbjct: 2 YLTKQIPHYSRIHTTQLLTVVNHRTIPFKIRGSFSNCRRYSNFATVPLL 50
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 99 EDVLDEIVSSEDLQKFERVFHEQLHQGNV 185
E++ D +VS E+L+K RVF + +GNV
Sbjct: 217 EEIRDLLVS-EELRKPARVFEDTSRRGNV 244
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 450 KRRPVNCNTTHYRANWVPGPPSRND 376
+ +P N H + VPGPP+ N+
Sbjct: 886 ENKPAESNLNHLTSAKVPGPPAFNE 910
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3
Query: 162 EQLHQGNVSHKAQFEYAWCLVRSKYPTDI 248
+ H G ++ K Q E+AW +V Y + +
Sbjct: 144 QAFHDGIINQK-QLEFAWSIVNDSYASSL 171
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Frame = +3
Query: 102 DVLDEIVSSEDLQKFERVFHEQLHQGNVSHKAQFE----YAWCLVRSKYP--TDIRKESY 263
D+L+ + + +Q+F + ++ Q + N+SH E + + +S P T+ + E+Y
Sbjct: 112 DMLESVEHEKSIQEFRKRYNVQKPKVNISHAEAEEDIDSFLESMDQSAPPSITEDKGENY 171
Query: 264 FLKNCSTLILKAN 302
N S++ + N
Sbjct: 172 ISSNHSSMHISRN 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,142
Number of Sequences: 5004
Number of extensions: 55349
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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