Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0371
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0915 - 7215863-7216063,7216743-7216802,7220032-7220091,722...    31   0.52 
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.2  
01_05_0563 - 23309557-23309979                                         29   2.1  
01_06_1667 + 38994627-38995718                                         29   3.7  
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602...    28   4.9  
09_02_0417 - 8915604-8916779,8916863-8917270                           27   8.5  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   8.5  

>01_01_0915 -
           7215863-7216063,7216743-7216802,7220032-7220091,
           7221138-7221203,7221927-7221992,7222334-7222411,
           7222940-7223297,7224548-7224606
          Length = 315

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 246 YP-LDTCCALNTMRIQTG-LCGKRSLDAIVHERPS 148
           YP L  CC+ N M+ QTG + G+RS D +  E P+
Sbjct: 213 YPYLGQCCSANPMQQQTGIMAGERSTDGLFPEFPA 247


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 427 ITIHWPSFYNVV-TGKTLALPNLIALQH 507
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>01_05_0563 - 23309557-23309979
          Length = 140

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = -1

Query: 586 RHSGCATVGKAIGAGLFAITPAGERGCAARRLSWVTPGFSQSRRCKTTASE 434
           R  G   +  AI AG F+ T   E  CA      + PG      C+ T  +
Sbjct: 72  RRCGAGAIAIAIAAGRFSGTGDCEHACALSMCGQIDPGSKMMAVCRDTCGK 122


>01_06_1667 + 38994627-38995718
          Length = 363

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +2

Query: 215 VFSAQQVSNGYTKGIL------LLKELFNSHPEGKRDYLFYLAIGNARIKEYNKALHYVK 376
           +++   + +GY KG +      LL++    HP   R     L  G  +++E+ KAL  +K
Sbjct: 233 IYTYSVIMSGYAKGGMMDEAHALLRDAKRIHPRLSRVTYHTLIRGYCKMEEFEKALECLK 292

Query: 377 SFLEGG 394
              E G
Sbjct: 293 EMKEDG 298


>03_05_0136 +
           21158917-21159939,21160183-21160241,21160259-21160294,
           21160345-21160387,21160582-21160698,21162090-21162179,
           21162329-21162436,21162547-21162588
          Length = 505

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 459 RDWENPGVTQLNRLAAHPLSPAGVIAKRPAPIAFPTVAQPE 581
           R W +  VT L+     PL  A +   RP+    P V++P+
Sbjct: 8   RRWASASVTDLSSAGRSPLPAAALSPVRPSARRSPAVSRPD 48


>09_02_0417 - 8915604-8916779,8916863-8917270
          Length = 527

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 99  EDVLDEIVSSEDLQKFERVFHEQLHQGNVSHK-AQFEYAWCLVRSKYPT 242
           E V+ E  S+    +   + H + H   +  K A F   WC V++KYP+
Sbjct: 151 EKVVAEYNSTIPATRRRELQHVKGHWHKIFRKVAHFHDCWCRVKAKYPS 199


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 439 WPSFYNVV-TGKTLALPNLIALQH 507
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,317,826
Number of Sequences: 37544
Number of extensions: 371247
Number of successful extensions: 900
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)