Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0371
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66070.1 68414.m07499 translation initiation factor-related s...    29   2.3  
At5g23490.1 68418.m02756 expressed protein                             27   7.1  
At2g19190.1 68415.m02239 light-responsive receptor protein kinas...    27   7.1  

>At1g66070.1 68414.m07499 translation initiation factor-related
           similar to Eukaryotic translation initiation factor 3
           subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
           (Swiss-Prot:O75822) [Homo sapiens]
          Length = 226

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 290 PEGKRDYLFYLAIGNARIKEYNKALHYV 373
           P+ + D+L Y  + + RIK Y K+ HY+
Sbjct: 123 PKSESDFLEYAEMISHRIKPYEKSYHYI 150


>At5g23490.1 68418.m02756 expressed protein
          Length = 729

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 168 LHQGNVSHKAQFEYAWCLVRSKYPTDIRKESYFLKNCSTLIL--KANVTTFSTLPLVMP 338
           LH G+ S+K      +  +       I++E Y +K  S L +  K + +T  T+P   P
Sbjct: 614 LHTGHASYKVSLAVGFVDIWEAATLSIKREGYSIKCISDLTIAEKFSASTTVTIPFGQP 672


>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
           senescence-responsive receptor-like serine/threonine
           kinase, putative (SIRK) similar to light repressible
           receptor protein kinase [Arabidopsis thaliana]
           gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
           Protein kinase domain and PF00560: Leucine Rich Repeat
          Length = 876

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 581 FRLRNCWKGDRCGPFRYYASWRKGVCCKAIKLGNARV 471
           +R++  W+GD C P  Y  SW    C ++    N RV
Sbjct: 382 YRVKKNWQGDPCVPVDY--SWEGIDCIQSDNTTNPRV 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,783,219
Number of Sequences: 28952
Number of extensions: 289423
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)