Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0370
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 2e-41
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 3e-41
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 3e-41
SB_56| Best HMM Match : Actin (HMM E-Value=0) 165 3e-41
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 165 3e-41
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 163 1e-40
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 143 9e-35
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 55 4e-08
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 54 7e-08
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_54| Best HMM Match : Actin (HMM E-Value=0) 42 5e-04
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_1452| Best HMM Match : Oxidored_q4 (HMM E-Value=8.8) 27 9.3
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.3
SB_665| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 165 bits (402), Expect = 2e-41
Identities = 76/83 (91%), Positives = 81/83 (97%)
Frame = -1
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 340
L +TV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 267 LYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 326
Query: 339 QQMWISKQEYDESGPSIVHRKCF 271
QQMWISKQEYDESGP+IVHRKCF
Sbjct: 327 QQMWISKQEYDESGPAIVHRKCF 349
Score = 67.7 bits (158), Expect = 7e-12
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -2
Query: 608 KPSFLGMKACGIHETTYNSIMKCDVDIRKDLYA 510
+PSFLGM++ GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 237 QPSFLGMESSGIHETTYNSIMKCDVDIRKDLYA 269
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 165 bits (401), Expect = 3e-41
Identities = 77/83 (92%), Positives = 80/83 (96%)
Frame = -1
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 340
L +TVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 256 LYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 315
Query: 339 QQMWISKQEYDESGPSIVHRKCF 271
QQMWISKQEYDESGP+IVHRKCF
Sbjct: 316 QQMWISKQEYDESGPAIVHRKCF 338
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -2
Query: 608 KPSFLGMKACGIHETTYNSIMKCDVDIRKDLYA 510
+PSFLGM++ GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 226 QPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 258
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 165 bits (401), Expect = 3e-41
Identities = 77/83 (92%), Positives = 80/83 (96%)
Frame = -1
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 340
L +TVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 339 QQMWISKQEYDESGPSIVHRKCF 271
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -2
Query: 608 KPSFLGMKACGIHETTYNSIMKCDVDIRKDLYA 510
+PSFLGM++ GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 264 QPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 296
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 165 bits (401), Expect = 3e-41
Identities = 77/83 (92%), Positives = 80/83 (96%)
Frame = -1
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 340
L +TVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 339 QQMWISKQEYDESGPSIVHRKCF 271
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -2
Query: 608 KPSFLGMKACGIHETTYNSIMKCDVDIRKDLYA 510
+PSFLGM++ GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 263 QPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 295
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 165 bits (400), Expect = 3e-41
Identities = 77/83 (92%), Positives = 80/83 (96%)
Frame = -1
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 340
L +TVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 339 QQMWISKQEYDESGPSIVHRKCF 271
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -2
Query: 608 KPSFLGMKACGIHETTYNSIMKCDVDIRKDLYA 510
+PSFLGM++ GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 264 QPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 296
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 163 bits (396), Expect = 1e-40
Identities = 76/83 (91%), Positives = 80/83 (96%)
Frame = -1
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 340
L +TVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 339 QQMWISKQEYDESGPSIVHRKCF 271
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -2
Query: 608 KPSFLGMKACGIHETTYNSIMKCDVDIRKDLYA 510
+PSFLGM++ GIHETTYNSIMKCDVDIRKDLYA
Sbjct: 263 QPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 295
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 143 bits (347), Expect = 9e-35
Identities = 65/83 (78%), Positives = 74/83 (89%)
Frame = -1
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 340
L + VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTF
Sbjct: 67 LYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTF 126
Query: 339 QQMWISKQEYDESGPSIVHRKCF 271
QQMWI+K+EY E GP IVHRKCF
Sbjct: 127 QQMWIAKEEYHEYGPPIVHRKCF 149
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = -2
Query: 608 KPSFLGMKACGIHETTYNSIMKCDVDIRKDLYA 510
+P+FLGM+A GIHE YN IMKCDVDIRKDLY+
Sbjct: 37 QPAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYS 69
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 55.2 bits (127), Expect = 4e-08
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 16/103 (15%)
Frame = -1
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIAPPERK 388
L ++ VLSGG+TM+ R+Q++I + P ++ ++I+ ++
Sbjct: 242 LYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQR 301
Query: 387 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 259
Y+VW GGS+LAS F + +K +YDE GPSI F HR
Sbjct: 302 YAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Frame = -1
Query: 522 GLVRHTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILAS 352
GL +++GG T+ G +R+ +E+ + P +M++K+I+ E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 351 L 349
L
Sbjct: 230 L 230
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 44.0 bits (99), Expect = 1e-04
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 29/101 (28%)
Frame = -1
Query: 513 RHTVLSGGTTMYPGIA------------DRMQKEITALAPSTM----------------K 418
+H VLSGG+TMYPG+ +R+ K T+ S M K
Sbjct: 299 KHIVLSGGSTMYPGLPSRLEREIKQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFK 358
Query: 417 IKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 298
I+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 359 IRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -2
Query: 608 KPSFLGMKACGIHETTYNSIMKCDVDIRKDLY 513
+PS LG GIHE+ + SI KCD+D+R +L+
Sbjct: 2308 QPSLLGRDIDGIHESIFKSIKKCDIDLRAELF 2339
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = -1
Query: 519 LVRHTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGG 367
L + VL GGT M PG R+ +EI L S +K+ PP + W+GG
Sbjct: 77 LAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGG 136
Query: 366 SILASLSTFQQMWISKQEYDE 304
+I SL +++ Y +
Sbjct: 137 AIFGSLEVLADRSTTRERYQQ 157
>SB_1452| Best HMM Match : Oxidored_q4 (HMM E-Value=8.8)
Length = 154
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 481 HGGTTGQYGVAYKSLRMSTSHFMMELYVVSWM 576
H GT QY Y+ +RM MM + +V M
Sbjct: 50 HSGTGPQYATPYQQVRMMAMRMMMMVILVVMM 81
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 362 IDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGYMV-VPPD 499
+DPP+ +Y L+GG ++ + FCI G++V PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCI---FQGFVVPTPPE 801
>SB_665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 452 FCIRSAIPGYMVVPPDNTVWRTSP 523
FC PG + +P D T W+ P
Sbjct: 32 FCCTVERPGLLTIPDDYTCWKVGP 55
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,328,284
Number of Sequences: 59808
Number of extensions: 451937
Number of successful extensions: 1380
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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