Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0369
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    28   1.2  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    27   1.6  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   2.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   3.7  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   3.7  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    25   6.5  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   6.5  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   6.5  

>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 589 SPAKGNTKFGKEEGNFFANNQQASTGDTAEDYPTKVPVEVQKINP 455
           S +K   K     G  F  N  +ST  T+    TK P+  Q+ NP
Sbjct: 381 SNSKSKKKVTSISGTSFFKNLASSTKPTSASSSTKAPLTKQQTNP 425


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 63  LFNVTISIGFIITVSFTINKKTSCSINIHSKP 158
           L N  ++IG +  V  +I++KT C ++I++ P
Sbjct: 453 LENGALAIGVVNCVGSSISRKTHCGVHINAGP 484


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 313 YLYFSKCYFHVKIL 354
           +LY SKCY+H  IL
Sbjct: 71  FLYLSKCYYHTHIL 84


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 612  HWVLKALIAPQKEIPNLEKKKETFLQTINKLQQAILQKIIPQKCRLKCKRSTPRNW 445
            +W      +P K I  L +K  T L   N   + +LQK+I  +C  K    T  N+
Sbjct: 1133 NWFTAVFGSPSKAIVGLARKGLTALLLENSSNEVLLQKVI-NRCFSKEISQTISNY 1187


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 252 FSGSTLFLGNIT*VAFVTLG 311
           F GST FLGN T +A + LG
Sbjct: 388 FFGSTGFLGNATVIAILALG 407


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 493 DNLLQYRLLKLVDCLQKSF 549
           DN+ + R +K VDCL+ +F
Sbjct: 428 DNISKSRAIKFVDCLKSNF 446


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 501 KIIPQKCRLKCKRSTP 454
           K  P+KCR +C+RS P
Sbjct: 15  KCRPKKCRQECRRSCP 30


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 490  TKVPVEVQKINPEKLAQSQGEIEKLLSAIETL 395
            T VP+ V  INP+  + S  E   L+  + +L
Sbjct: 912  TGVPILVADINPQMTSSSSNETSHLIQELHSL 943


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,000
Number of Sequences: 5004
Number of extensions: 47544
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)