Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0369
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175...    30   1.7  
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871           29   2.2  
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181...    28   5.1  
06_01_0273 + 2022479-2022592,2022830-2022973,2023524-2023601,202...    28   5.1  
02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657...    28   5.1  
05_04_0044 + 17470457-17470613,17470696-17470789,17471069-174711...    28   6.7  
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282...    27   8.9  

>12_01_0234 +
           1755704-1756120,1756203-1756313,1756923-1757063,
           1757142-1757312,1757412-1757616,1757738-1757910,
           1758021-1758103,1758250-1758389,1758569-1758645,
           1758711-1758810,1759978-1760606
          Length = 748

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 535 NNQQASTGDTAEDYPTKVPVEVQKINPEKLAQSQGEIEKLL 413
           NN  AST      Y   +P  V +   ++L +  GEIEK++
Sbjct: 272 NNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVV 312


>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
          Length = 177

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = -2

Query: 594 LIAPQKEIPNLEKKKETFLQTINKLQQAILQKIIPQKCRLK------CKRSTPRNWLNLR 433
           +++ + + P  E+KK+   +   KL++A   K   +KC +K      C  STP ++  + 
Sbjct: 66  IVSVEDDKPKEEEKKDPCKEAKEKLEKA--WKEYCEKCNVKLKPGCPCSCSTPCSFPPIG 123

Query: 432 ARSRSYCPP 406
              R  CPP
Sbjct: 124 CHDRGICPP 132


>11_01_0236 +
           1811822-1812971,1814930-1814979,1815676-1816116,
           1816199-1816309,1816934-1817074,1817153-1817323,
           1817421-1817625,1817714-1817886,1817997-1818079,
           1818487-1818626,1818806-1818891,1818957-1819142,
           1819172-1819365,1820387-1820736,1821153-1821235
          Length = 1187

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 535 NNQQASTGDTAEDYPTKVPVEVQKINPEKLAQSQGEIEKLL 413
           NN   ST      Y   +P  V +   ++L +  GEIEK++
Sbjct: 680 NNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVV 720


>06_01_0273 +
           2022479-2022592,2022830-2022973,2023524-2023601,
           2025361-2025585,2025684-2025782,2026177-2026235,
           2026351-2026501,2026590-2026754
          Length = 344

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -2

Query: 606 VLKALIAPQKEIPNLEKKKETFLQTINKLQQAILQKIIPQKCR 478
           V K  I+P++ I  L K  +  L  INK Q   L++++ QKCR
Sbjct: 199 VPKVNISPEEAIAKLAKDTDNELIEINK-QLEELRQMVVQKCR 240


>02_05_1213 -
           34963971-34964658,34965030-34965270,34965347-34965736,
           34966515-34966781,34966881-34967249,34967931-34968014,
           34968113-34968226,34969952-34970018
          Length = 739

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 358 HREF*HGSNILKNID-RPKVTNATYVMLPRNNVDPLKVRIYYFNVYIYVA 212
           HR+F  GSNIL   D  PKVT+        N + P+  R+     + YVA
Sbjct: 468 HRDF-KGSNILLEEDFTPKVTDFGLAREATNGIQPISTRV--MGTFGYVA 514


>05_04_0044 +
           17470457-17470613,17470696-17470789,17471069-17471132,
           17471378-17471477,17472027-17472085,17472572-17472647,
           17472761-17472832,17473788-17473932,17474044-17474299,
           17475190-17475305,17475503-17475723,17475996-17476024,
           17476622-17476740,17476828-17477023,17477242-17477250
          Length = 570

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 445 PVSRG*SFALQPALLWDNLLQYRLLKLVDCLQKSFLLLF 561
           P + G    +Q  LLWD  + Y + K+  C+Q+   + +
Sbjct: 95  PQASGTLLLIQVCLLWDGRVSYMIKKIHICVQQKVYIFY 133


>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
            20928549-20928788,20928884-20928978,20929087-20929434,
            20929824-20930042,20930422-20930487,20931191-20931362,
            20931456-20931703,20931933-20932073,20932238-20932330,
            20932421-20932471,20933571-20933693,20933793-20934035,
            20934131-20934211,20935245-20935340,20935535-20936320,
            20936443-20937012,20937322-20937427,20938102-20938206,
            20938311-20938432,20939321-20939413,20940081-20940104
          Length = 1685

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 69   NVTISIGFIITVSFTINKKTSCSINIHSKP 158
            + T ++GFI T+++ I+ K S +  IH  P
Sbjct: 1146 SATAALGFICTLTYNISGKDSAAAVIHKLP 1175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,713,818
Number of Sequences: 37544
Number of extensions: 252348
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)