Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0369
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24) 29 3.0
SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32) 29 3.9
SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05) 28 5.2
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_25073| Best HMM Match : Extensin_2 (HMM E-Value=0.27) 28 5.2
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_33770| Best HMM Match : Troponin (HMM E-Value=8.9) 28 6.9
SB_13019| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-23) 28 6.9
SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_43366| Best HMM Match : CUB (HMM E-Value=3.6e-39) 27 9.1
SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016) 27 9.1
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -1
Query: 577 GNTKFGKEEGNFFANNQQASTGDTAEDYPTKVPVEVQKINPEKLAQSQ--GEIEKL 416
G T GK + S + AED P +PV+ +NP+ + + GE+ KL
Sbjct: 284 GPTGSGKTTNYMMLQDTLTSLHEQAEDSPYYLPVQTHILNPKSVTMGELYGEVNKL 339
>SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24)
Length = 316
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 516 QAILQKIIPQKCRLKCKRSTP 454
Q IL+K++ QKC CK +TP
Sbjct: 199 QGILEKLVQQKCPENCKVNTP 219
>SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)
Length = 1077
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 536 KQSTSFNRRYCRRLSHKSAG*SAK 465
K + F+RR+ RR++HK+A SAK
Sbjct: 770 KAAEEFSRRFLRRMAHKAAKKSAK 793
>SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05)
Length = 533
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -2
Query: 540 LQTINKLQQAILQKIIPQKCRLKCKRSTPRNWLNLRARSRS 418
+QTI+ Q + KI +K R KR+ R+WLN+R + S
Sbjct: 397 IQTIDLKQIKTIFKI-GRKIRESLKRARVRSWLNIRLKGAS 436
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 613 TLGVESPYSPAKGNTKFGKEEGNFFANNQQASTGDTAEDYPTKVPVEVQKIN 458
TLG+ Y+PAKG T + + E N NN + G ++ K+N
Sbjct: 1055 TLGLLPQYAPAKGPTGYNEPENN--GNNTRIEGGTQTDNGTQATQSNDTKVN 1104
>SB_25073| Best HMM Match : Extensin_2 (HMM E-Value=0.27)
Length = 744
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 553 EGNFFANNQQASTGDTAED 497
EGN N Q+A+T DTAED
Sbjct: 593 EGNTEGNQQRAATSDTAED 611
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/65 (20%), Positives = 34/65 (52%)
Frame = -1
Query: 268 NVDPLKVRIYYFNVYIYVAHYTLHFYTFIQLVFYV*YGFECIFMLQEVFLLIVKETVIMK 89
+++ + IY F ++IY +H +T + L F + + + ++ + ++I + T+++
Sbjct: 347 DINQFTIDIYQFTIFIYQFTIVIHKFTIVILQFTIVFR-QFTIVINQFTIVIHQFTIVIY 405
Query: 88 PILIV 74
IV
Sbjct: 406 QFTIV 410
>SB_33770| Best HMM Match : Troponin (HMM E-Value=8.9)
Length = 133
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 564 LEKKKETFLQTINKLQQAILQKIIPQKCRLKCK 466
+EK E +T N+L + +K+ PQ RLK K
Sbjct: 52 MEKTNELIRETKNRLSEEFKEKLKPQVHRLKMK 84
>SB_13019| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-23)
Length = 498
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 528 NKLQQAILQKIIPQKCRLKCKRSTPRNWLN---LRARSRSY 415
N +A+++ I+P +C R P++W+N LRA +Y
Sbjct: 418 NADNEAVVRNILPYPLYTRCVRICPQSWINHISLRADMYTY 458
>SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = -1
Query: 592 YSPAKGNTKFGK----EEGN---FFANNQQASTGDTAEDYPTKVPVEVQKINPE 452
+SP TK G+ EGN +NQ + G T+ P+ PV+V +++PE
Sbjct: 337 FSPGFNITKIGEFYASTEGNANVINIDNQVGAVGFTSRIVPSAYPVKVVRVDPE 390
>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 44
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 241 YYFNVYIYVAHYTLHFYTFIQLVFYV*YGFECIFMLQE 128
YY+ Y Y +Y ++Y + +Y Y + C + QE
Sbjct: 4 YYYYHYYYYYYYYYYYYYYYYYYYY--YYYYCCYFQQE 39
>SB_43366| Best HMM Match : CUB (HMM E-Value=3.6e-39)
Length = 306
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Frame = -1
Query: 229 VYIYVAH-YTLHFYTFI-QLVFYV*YGFECIFM--LQEVFLLI-----VKETVIMKPILI 77
V I+V++ Y + T + ++VF+V YG EC ++ ++EV + K MK ++
Sbjct: 4 VVIFVSYGYECKYLTPMKEVVFFVSYGCECKYLTPMKEVVFFVSYGYECKYLTPMKEVVF 63
Query: 76 VTLNNQLSLIFYLINYAFCKKK 11
T + + +L++Y C+ K
Sbjct: 64 FTYLTPMKEVVFLVSYR-CEYK 84
>SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)
Length = 1284
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 160 YGFECIFMLQEVFLLIVK-ETVIMKPILIVTLNNQLSL 50
YGFEC+ M E +L+VK T I++ L L SL
Sbjct: 496 YGFECLEMDDEEGMLLVKNRTAILEDSLSRALEENTSL 533
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,910,890
Number of Sequences: 59808
Number of extensions: 324597
Number of successful extensions: 1050
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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