Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0369
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    36   0.017
Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical pr...    31   0.49 
U49954-1|AAA93426.1|  388|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z75527-2|CAA99775.2|  636|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF370361-1|AAK52514.1|  636|Caenorhabditis elegans putative tran...    29   3.5  
AB096001-1|BAE53417.1|  676|Caenorhabditis elegans bHLH-PAS fact...    29   3.5  

>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
            protein Y87G2A.5 protein.
          Length = 1050

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = -1

Query: 508  TAEDYPTKVPVEVQKINPEKLAQSQGEIEKLLSAIETLKLM 386
            ++ DY  KVPV+++ ++ EK A  + EIE + +AI  LK +
Sbjct: 1009 SSADYEQKVPVDIRALDQEKKATLEKEIENITAAIAQLKAL 1049


>Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical
           protein T04A8.1 protein.
          Length = 324

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = -1

Query: 229 VYIYVAHYTLHFYTFIQLVFYV*YGFECIFMLQEVFLLIVKETVIMKPILIVTLNNQLSL 50
           +Y    HY+L F TF Q +F       C+  L +  L + K+  I+KP+LI+T    L +
Sbjct: 115 MYYAALHYSLGFKTFSQ-IFMSFNRMTCVIFLMK-HLKLWKQ--ILKPVLIITFILPLGV 170

Query: 49  IFYLI 35
           I+ ++
Sbjct: 171 IWKIL 175


>U49954-1|AAA93426.1|  388|Caenorhabditis elegans Hypothetical
           protein Y102E9.2 protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 544 FFANNQQASTGDTAEDYPTKVPVEVQKINPEKLAQSQGEIEKLLSAIETLKLM*L-QTRI 368
           F A+     T   +E+   K  +   KINPE++ +   +IEK L A+E   ++ L  + +
Sbjct: 12  FIASGDLIRTFRISEETELKNFISWSKINPERIQKPSFDIEKELKAVEKRVILCLAHSNV 71

Query: 367 *TNH 356
            T H
Sbjct: 72  LTTH 75


>Z75527-2|CAA99775.2|  636|Caenorhabditis elegans Hypothetical
           protein C15C8.2 protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 604 VESPYSPAKGNTKFGKEEGNFFANNQQASTGDTAEDYPTKVPVEVQKI 461
           +  P +   G +  G   G+   N QQ ST   ++    ++ VE+QK+
Sbjct: 52  INVPNNNTMGMSSAGSSNGSNLVNGQQRSTRGASKQRRDQINVEIQKL 99


>Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical
           protein F46G10.5 protein.
          Length = 765

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 249 LGFIILMYIFM*HIILYIFTRLFSLFFMYNMV 154
           LGF +L+ +F+   +L+ F+RLF  F ++ +V
Sbjct: 190 LGFGVLLSLFVLFGVLFFFSRLFCQFTIFRIV 221


>AF370361-1|AAK52514.1|  636|Caenorhabditis elegans putative
           transcription factor C15C8.2protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 604 VESPYSPAKGNTKFGKEEGNFFANNQQASTGDTAEDYPTKVPVEVQKI 461
           +  P +   G +  G   G+   N QQ ST   ++    ++ VE+QK+
Sbjct: 52  INVPNNNTMGMSSAGSSNGSNLVNGQQRSTRGASKQRRDQINVEIQKL 99


>AB096001-1|BAE53417.1|  676|Caenorhabditis elegans bHLH-PAS factor
           protein.
          Length = 676

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 604 VESPYSPAKGNTKFGKEEGNFFANNQQASTGDTAEDYPTKVPVEVQKI 461
           +  P +   G +  G   G+   N QQ ST   ++    ++ VE+QK+
Sbjct: 52  INVPNNNTMGMSSAGSSNGSNLVNGQQRSTRGASKQRRDQINVEIQKL 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,127,330
Number of Sequences: 27780
Number of extensions: 267124
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)