Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0369
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 275 RQHNISSICNLRSIYIFQNVTSML 346
           R HNIS++C    I + Q V+  L
Sbjct: 127 RDHNISALCKELGISVVQKVSHTL 150


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 72  VTISIGFIITVSFT 113
           +++ IG +ITVSFT
Sbjct: 417 ISLGIGEVITVSFT 430


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = -2

Query: 609 WVLKALIAPQKEIPNLEKKKETFLQTINKLQQAILQKIIPQKCRLKCKRS 460
           W++  LI+     P+ ++  +  L   NKL + ++        ++K K S
Sbjct: 10  WIVLVLISGCSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLS 59


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 136 LQEVFLLIVKETVIMKPILIVTLNNQLSLIFYLINYAFC 20
           L  +FL +     ++ PI+  TLN      F  I Y  C
Sbjct: 408 LSSLFLWLGYCNSLLNPIIYATLNRDFRKPFREILYFRC 446


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 549  ETFLQTINKLQQAILQKIIPQKCRL 475
            ++ LQT N  QQ+  Q ++P K  L
Sbjct: 997  KSILQTANIKQQSPQQHVLPGKTLL 1021


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,412
Number of Sequences: 438
Number of extensions: 3475
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)