Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0369
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72210.1 68414.m08349 basic helix-loop-helix (bHLH) family pr...    31   0.80 
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea...    29   3.2  
At5g02630.1 68418.m00199 expressed protein                             27   9.8  
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.8  
At2g01420.2 68415.m00063 auxin transport protein, putative simil...    27   9.8  
At2g01420.1 68415.m00062 auxin transport protein, putative simil...    27   9.8  
At1g68470.1 68414.m07822 exostosin family protein contains Pfam ...    27   9.8  
At1g18870.1 68414.m02349 isochorismate synthase, putative / isoc...    27   9.8  

>At1g72210.1 68414.m08349 basic helix-loop-helix (bHLH) family
           protein (bHLH096) identical to basic-helix-loop-helix
           transcription factor [Arabidopsis thaliana] GI:20520637;
           contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain; PMID: 12679534
          Length = 320

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 580 KGNTKFGKEEGNFFA-NNQQASTGDTAEDY 494
           K N K G+ +G+ FA NN    TGD ++DY
Sbjct: 40  KNNIKLGQGQGHGFASNNYNGRTGDYSDDY 69


>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400); some
           similarity to s-tomosyn isoform (GI:4689231)[Rattus
           norvegicus]; contains non-consensus AT-AC splice sites
           at intron 18
          Length = 1606

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -1

Query: 337 SNILKNIDRPKVTNATYVMLPRNNVDPLKVRIYYFNVYIYVAHYTLHFYTFIQLV 173
           + I  ++ +P V  A +  LP   V   +  I  +N++ Y  HYTL     I+L+
Sbjct: 149 TKIKTDLKKPIVNIACHPRLPVLYVAYAEGLIRAYNIHTYAVHYTLQLDNTIKLI 203


>At5g02630.1 68418.m00199 expressed protein
          Length = 428

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 235 FNVYIYVAHYTLHFYTFIQL 176
           F+  +  +HY LHF+TF+ L
Sbjct: 90  FSFCVLDSHYILHFFTFVDL 109


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 558 KKKETFLQTINKLQQAILQKIIPQKCRLKCKRSTP 454
           K  ET L+++NK+    L KII +K R  C  S+P
Sbjct: 78  KAPETLLKSLNKVGAMNLSKIIEEK-RYSCIISSP 111


>At2g01420.2 68415.m00063 auxin transport protein, putative similar
           to auxin transport protein PIN7[Arabidopsis thaliana]
           gi|5817305|gb|AAD52697
          Length = 616

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 550 GNFFANNQQASTGDTAEDYPTKVPVEVQKINPEKLAQSQGEIEKL 416
           G++ A N + STG      P K+P E Q+   EK +++  + ++L
Sbjct: 304 GSYPAPNPEFSTGTGVSTKPNKIPKENQQQLQEKDSKASHDAKEL 348


>At2g01420.1 68415.m00062 auxin transport protein, putative similar
           to auxin transport protein PIN7[Arabidopsis thaliana]
           gi|5817305|gb|AAD52697
          Length = 612

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 550 GNFFANNQQASTGDTAEDYPTKVPVEVQKINPEKLAQSQGEIEKL 416
           G++ A N + STG      P K+P E Q+   EK +++  + ++L
Sbjct: 304 GSYPAPNPEFSTGTGVSTKPNKIPKENQQQLQEKDSKASHDAKEL 348


>At1g68470.1 68414.m07822 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 455

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -3

Query: 212 TLYFTFLHVYSACFLCIIWF*MYIYATRSFFINCKRNCDYETNTYCY 72
           T+  T L +   C +C ++  +    T  F  +  R CD+    Y Y
Sbjct: 30  TVKLTLLTLLLLCSICFLFLTLNFPFTIEFTASIPRTCDHNFTVYVY 76


>At1g18870.1 68414.m02349 isochorismate synthase, putative /
           isochorismate mutase, putative similar to GI:17223087
          Length = 512

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 433 PEIEPVSRG*SFALQPALLWDNLLQYRLLKLVDCLQKSFL 552
           P++E    G S  L   + WDN L + L   ++ LQ++ L
Sbjct: 172 PQVEFDEFGGSSMLAATVAWDNELSWTLENAIEALQETML 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,900,795
Number of Sequences: 28952
Number of extensions: 229033
Number of successful extensions: 671
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)