Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0368
         (511 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q896S3 Cluster: Transcriptional regulatory protein; n=1...    34   1.6  
UniRef50_A2TW83 Cluster: Glycosyl transferase, family 2; n=1; Do...    34   2.2  
UniRef50_Q9EXH4 Cluster: Internalin H precursor; n=2; Listeria i...    32   8.7  

>UniRef50_Q896S3 Cluster: Transcriptional regulatory protein; n=1;
           Clostridium tetani|Rep: Transcriptional regulatory
           protein - Clostridium tetani
          Length = 396

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 16/56 (28%), Positives = 34/56 (60%)
 Frame = -3

Query: 185 YINCITTSAETDIRFYSSNKNIKVAPFERWNRRIDLIVFLDSLSAAI*FKIPYLYK 18
           ++NC+   A+   ++ ++NKN +++P+   +R +  I+F  SL + I   +PY+ K
Sbjct: 186 HMNCLKRVAKEISKYVTNNKNFELSPYIDADRSVS-IIFQSSLKSNIEKMLPYIEK 240


>UniRef50_A2TW83 Cluster: Glycosyl transferase, family 2; n=1;
           Dokdonia donghaensis MED134|Rep: Glycosyl transferase,
           family 2 - Dokdonia donghaensis MED134
          Length = 488

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = -3

Query: 494 INKTGCCRLIISFSHLANLPGLIFI---TRVEVLIL*HSGYFPNERNMTNKINIVTFSCM 324
           ++  G CR       LA  P L+F     RVE   +     F N      K   +TF+C+
Sbjct: 281 LDTAGACRARNMAVSLATAPWLLFFDDDVRVESTFIDEVTSFINR----TKATCITFACL 336

Query: 323 YISNQKTMATLKQSTNLPSGIEII 252
               ++TM T KQ  +  SG  I+
Sbjct: 337 QKGEKETMKTYKQWESFGSGCSIV 360


>UniRef50_Q9EXH4 Cluster: Internalin H precursor; n=2; Listeria
           ivanovii|Rep: Internalin H precursor - Listeria ivanovii
          Length = 272

 Score = 31.9 bits (69), Expect = 8.7
 Identities = 14/60 (23%), Positives = 35/60 (58%)
 Frame = -3

Query: 485 TGCCRLIISFSHLANLPGLIFITRVEVLIL*HSGYFPNERNMTNKINIVTFSCMYISNQK 306
           T   +L +S++H++++  L  ++++EVL L  +      +++ +  N+    C+Y+SN +
Sbjct: 96  TNLTKLYLSYNHISDISALASLSQLEVLSLKQN----KLKDINSLANLTKLRCLYVSNNQ 151


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 457,646,386
Number of Sequences: 1657284
Number of extensions: 8506323
Number of successful extensions: 16839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16838
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)