Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0368
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    28   0.71 
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   2.9  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   8.7  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.7  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   8.7  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   8.7  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = -3

Query: 314 NQKTMATLKQSTNLPSGIEIILTSKT*GAFCEKLADFFSRCRRYINCITTSAETDIRFY- 138
           N++  +   Q + L + +E + TSK      E LAD+ S  +   N    S    +R + 
Sbjct: 693 NEQIESLNDQLSQLKTEMESVTTSK------ESLADYLSNLKERHNDELDSLNKKLREFE 746

Query: 137 ---SSNKNIKVAPFERWNRRIDLIVFLDSLSAAI 45
              SSN ++K    ER N+ + L    DSL  AI
Sbjct: 747 GILSSNSSLKSEIEERNNQYVTLRENFDSLQNAI 780


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 383 YFPNERNMTNKINIVTFSCMYISNQKTMATLKQSTNLPSGIEI 255
           Y   E   +N +  ++ + +   +   +AT  Q TNLPSG+++
Sbjct: 676 YLYYENRQSNTLKSLSSTLIRTFSTFHLATTFQDTNLPSGVQL 718


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 223 QNAP*VFEVKIISMPDGRFVDCFS 294
           +NAP     K++S+PD RF +  S
Sbjct: 306 ENAPIPLLPKVVSLPDPRFTNVLS 329


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 200 SRCRRYINCITTSAETDI-RFYSSNKNIKVAPFERWNRRIDLIVFLDSLSAAI*FKIPY 27
           +R +R+      + E+ +    S+   IKVAP E+    +  I F D LSA++  K  Y
Sbjct: 58  NRKKRHTKTYVEALESQLANMESTLAKIKVAPVEKIPSLLAGISFKDHLSASLPNKTSY 116


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 188 CDISKKNRRVFRKMHLKFLKSRL 256
           CD+  KN++VF   H  F K  L
Sbjct: 201 CDLCVKNKKVFTHEHTLFSKKGL 223


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 197 RCRRYINCI-TTSAETDIRFYSSNKNIKVAPFE 102
           R R +++ + TTS ETD R + S   I++   E
Sbjct: 236 RWREFLSTVFTTSLETDERDFESENRIEIIDLE 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,275
Number of Sequences: 5004
Number of extensions: 40203
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)