Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0368
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)                    29   1.7  
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  

>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
          Length = 1276

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = -3

Query: 503  GTYINKTGCC--RLIISFSHLANLPGLIFITRVEVLIL*HSGYFPNERNMTNKINIVT 336
            G Y+++   C  +L +S+ H  ++P  + +  +E+L L  +G  P+ + + + +NIVT
Sbjct: 877  GAYVSEMNECFRKLFLSY-HGQSMPDHLLVATLEILSLTSTGINPDVKLLHHVMNIVT 933


>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 75  YQVNSSIPPLKWGNLYVFIRAIKSDVRLCASCNAIYVSATSRKKIG 212
           +++ + + P++  N Y+F RAI      CA+ +  Y     R+  G
Sbjct: 762 FEIETDLLPIEHNNFYLFSRAIPPIFMACAASSPKYGDQFGRRISG 807


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,044,291
Number of Sequences: 59808
Number of extensions: 263698
Number of successful extensions: 485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)