Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0368
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032661-1|CAA21755.1|  182|Caenorhabditis elegans Hypothetical ...    29   2.6  
U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AL117204-1|CAB55141.1|  328|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AL032661-1|CAA21755.1|  182|Caenorhabditis elegans Hypothetical
           protein Y73F4A.1 protein.
          Length = 182

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -3

Query: 443 NLPGLIFITRVEVLIL*HSGYFPNERN-MTNKINIVTFSCMYISNQKTMATLKQSTNLPS 267
           NL  +IF  R + +I  +SGY P ++  + + ++ VT + + I+  K   T+ +    P+
Sbjct: 66  NLESIIFSRREDNVITTNSGYTPKKKKVVVDDVSYVTVNDVQITGNKLKVTVSRPLG-PA 124

Query: 266 G 264
           G
Sbjct: 125 G 125


>U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical
           protein T12E12.1 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +3

Query: 129 IRAIKSDVRLCASCNAIYVSATSRKKIGEFFAKCTLSF*SQDYFNA*WKICRLFQCC 299
           +  ++     C  C A Y + TS + I ++  KC     + +Y +A  K C     C
Sbjct: 237 VTCMQCHTSFCVKCGADYHAPTSCETIKQWMTKCADDSETANYISAHTKDCPQCHSC 293


>Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical
           protein F43A11.6 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +1

Query: 196 LEKKSASFSQNAP*VFEVKIISMPDGRFVDCFSVAMVF*LLIYIQENVTILILFVIFRSL 375
           +   S +++   P      II + +G F    ++++V+ + +Y+ +  T   L  +FRSL
Sbjct: 5   MSSSSVTYNYKDPLNLLASIIMIVNGIFGSVCNLSIVY-IFMYVPKEKTSFNLICVFRSL 63

Query: 376 G 378
           G
Sbjct: 64  G 64


>AL117204-1|CAB55141.1|  328|Caenorhabditis elegans Hypothetical
           protein Y116A8C.1 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 84  NSSIPPLKWGNLYVFIRAIKS 146
           NS++PP ++ N+Y +I  I+S
Sbjct: 238 NSALPPTRYSNMYFWIDGIRS 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,906,237
Number of Sequences: 27780
Number of extensions: 222855
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)