Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0368
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   5.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.4  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 221 EKLADF--FSRCRRYINCITTSAETDIRFYSSNKNIKVA 111
           E++ D   F+   + +N    +  +DI+  S+N+ +KV+
Sbjct: 512 EQIVDLKAFNNVPKKLNMFYNNFNSDIKSISNNEQVKVS 550


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 221 EKLADF--FSRCRRYINCITTSAETDIRFYSSNKNIKVA 111
           E++ D   F+   + +N    +  +DI+  S+N+ +KV+
Sbjct: 512 EQIVDLKAFNNVPKKLNMFYNNFNSDIKSISNNEQVKVS 550


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 377 PNERNMTNKINIVTFSCMYISNQKTMATLK 288
           P E N  N IN+ T + +Y        TL+
Sbjct: 30  PGEINSINPINVYTKAYIYTIKSNMAKTLQ 59


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 455 SHLANLPGLIFITRVEVLIL*HSGY 381
           S +AN+P  +   R+ ++IL  +GY
Sbjct: 43  SIIANIPTWLSFIRIVLVILLRAGY 67


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = -3

Query: 431 LIFITRVEVLIL*HSGYFPNERNMTNKINIVTFSCMYISNQKTMATLKQSTNLPSGIEII 252
           ++  T V+ + +   G +   R+    I+I+     YIS  +           P+G E+ 
Sbjct: 152 VVINTEVKSIPVTKKGVYFAFRDQGACISILAIKVYYISCPEISVNFAHFPATPTGREVA 211

Query: 251 LTSKT*G 231
           L  +T G
Sbjct: 212 LIEQTIG 218


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 318 NIHTGKCDNINFVRHISFVGEITRMLEN*YLNSCYKN*TREIC*MTKAYN 467
           NI   K   I++  +   + E  R +EN  LN  YK+    I   TK  N
Sbjct: 420 NIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSYPNYIDKETKDMN 469


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 224 CEKLADFFSRCRRYIN 177
           CE+L +   R +R+IN
Sbjct: 247 CERLCNRLGRVKRFIN 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,283
Number of Sequences: 438
Number of extensions: 2733
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)