Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0368
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79680.1 68414.m09293 wall-associated kinase, putative simila...    27   7.3  
At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domai...    27   9.7  
At2g02690.1 68415.m00208 hypothetical protein                          27   9.7  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    27   9.7  
At1g19390.1 68414.m02412 wall-associated kinase, putative simila...    27   9.7  

>At1g79680.1 68414.m09293 wall-associated kinase, putative similar
           to wall-associated kinase 2 GI:4826399 from [Arabidopsis
           thaliana]
          Length = 769

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 232 VHFAKNSPIFFRDVADT*IALQLAQR-RTSDF 140
           +H A +SPI+ RD+  T I L    R + SDF
Sbjct: 547 LHSAASSPIYHRDIKSTNIMLDEKHRAKVSDF 578


>At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 540

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 72  NYQVNSSIPPLKWGNLYVFIRAIKSDVRLCASCNAIYVSATSRKKIGEFFAK 227
           ++ +   I P  W  + VF+ +I ++     +   I + AT+R   G+ FAK
Sbjct: 380 DFGIVGRISPKTWAAMEVFLASIATEEYESMASALIQMGATNRDVDGKAFAK 431


>At2g02690.1 68415.m00208 hypothetical protein
          Length = 623

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +3

Query: 75  YQVNSSIPPLKWGNLYVFIRAIKSDVR-LCASCNAIYVSAT---SRKKIGEFFAKCTL 236
           Y  +   PP + G + VF++  KS  R +CA C       T    RKK+   +  CTL
Sbjct: 563 YMKSGETPPKEGGQVRVFLQRNKSPSRPMCAKCKIRCPYPTYVEMRKKMYYPYFLCTL 620


>At1g44120.1 68414.m05096 C2 domain-containing protein /
           armadillo/beta-catenin repeat family protein similar to
           CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
           profiles PF00514: Armadillo/beta-catenin-like repeat,
           PF00168: C2 domain
          Length = 2114

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 72  NYQVNSSIPPLKWGNLYVFIRAIKSDVRLCA 164
           N  +NSS P +K G   + + A K+D+ L A
Sbjct: 887 NRTINSSSPEIKVGGAILLVCAAKNDITLWA 917


>At1g19390.1 68414.m02412 wall-associated kinase, putative similar
           to GB:CAB42872 from [Arabidopsis thaliana] (Plant Mol.
           Biol. 39 (6), 1189-1196 (1999))
          Length = 788

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 232 VHFAKNSPIFFRDVADT*IALQLAQR-RTSDF 140
           +H A +SPI+ RD+  T I L    R + SDF
Sbjct: 564 LHSAASSPIYHRDIKSTNILLDEKYRTKVSDF 595


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,974,587
Number of Sequences: 28952
Number of extensions: 192129
Number of successful extensions: 447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)