Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0366
         (632 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    27   0.13 
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    22   3.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.5  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.6  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = +2

Query: 17  LKHLLKFRVPSSSLHNYYIENFILNIAERNKCTLKSIKKHSLNQRVPFYLPIRFLVFN-- 190
           +K +  +    S +H      F+      + CT+  +++ +  Q +  YL + F VFN  
Sbjct: 477 VKCVSNYTKQQSKIHLIVRSVFVTTYLMFDYCTVLRVQRFNNYQSLAHYLRVFFTVFNVV 536

Query: 191 --FLTLEIQTI*LLGRYITFHREVIKI 265
             +L  E+  + L  R++T + ++ K+
Sbjct: 537 HCYLASEL-VLMLKNRFVTLNVQLTKL 562


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 626 VRVGEGT*PRCTGILSTGDGRNLARSQN 543
           +  G+G   R  GI+S G G+N  R QN
Sbjct: 5   ISAGQG---RRIGIISGGRGQNTQRVQN 29


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 98  ERNKCTLKSIKKHSLNQR 151
           ++ KCT+ ++  HSL  +
Sbjct: 15  KKRKCTVSNVSLHSLKNK 32


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 47  SSSLHNYYIENF 82
           ++S HNYY +N+
Sbjct: 294 NTSSHNYYAQNY 305


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,835
Number of Sequences: 336
Number of extensions: 2769
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)