Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0366
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        40   2e-04
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    28   0.97 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   3.0  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.2  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    25   6.9  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   9.1  

>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 24/69 (34%), Positives = 34/69 (49%)
 Frame = -1

Query: 497 EDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQPS 318
           E+ VEQ  QN P  L   D  +RTPLH+A  V K+ ++  +L +   K   KD  G  P 
Sbjct: 16  EEYVEQAIQNDPNSLNAVDDDKRTPLHWACSVGKVNTIYFLLKQPNIKPDEKDEAGWTPL 75

Query: 317 YYFMNKSDI 291
              +N   +
Sbjct: 76  MISINNRSV 84



 Score = 34.7 bits (76), Expect = 0.011
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = -1

Query: 491 IVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQPSYY 312
           IV+ L    PEL+R  D+  +TPLH A  V KI+ + + LI   A     D  G  P ++
Sbjct: 122 IVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQ-VVKYLISQRAPLNTSDSYGFTPLHF 180


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 356 KRVLKDLKGRQPSYYFMNKSDILRLKEEEDV 264
           +++ +D +  QPS  F+++ D L  K  EDV
Sbjct: 362 RKIFEDARAHQPSIIFIDEIDALAPKRTEDV 392


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 453 TYW*YFGTNSPTLRDGSRKDRV-PKSSSNKSWSKTRPQGSQGSTAILL 313
           TYW Y   NSPT+ + + +  V PK   +  W+     G+  +  +LL
Sbjct: 496 TYWYYTVFNSPTIIEKNFRQSVGPKPIPSCHWTSVSLGGAVATLLMLL 543


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +2

Query: 5   FSDILKHLLKFRVPSSSLHNYYIENFILNIAERNKCTLKSIKKHSLNQRVPFYLPIRFLV 184
           F  +++H+   R+  S    +  + FI  ++ +N C+LK    HS N+  P  + I F V
Sbjct: 291 FFQLMEHIDNERITPSE--QFLDKVFISLLSAKNSCSLKMWLIHSFNKGWP--VKIEFFV 346

Query: 185 FNF 193
             F
Sbjct: 347 SFF 349


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +2

Query: 32  KFRVPSSSLHNYYIENFILNI 94
           KF++PSSS++ ++++  +  I
Sbjct: 275 KFQIPSSSINRFFVQGIVKRI 295


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 419 HYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQPS 318
           H+A   E + SLS +L     KR  K L+G++ S
Sbjct: 604 HFASAEELLHSLSHLLHHPSTKRSHKMLEGKELS 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,524
Number of Sequences: 5004
Number of extensions: 47206
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)