Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0366
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127 31 0.58
12_01_0774 + 7063465-7064011,7065183-7065791,7067905-7068464,706... 31 1.0
09_04_0711 + 19666277-19666283,19666836-19666954,19667068-196672... 30 1.3
09_02_0297 - 7051592-7052469,7053197-7053302,7053396-7053471,705... 29 2.3
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765... 29 2.3
03_02_0171 + 6126685-6127107,6127237-6127581,6127701-6127997,612... 29 2.3
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 29 2.3
12_01_1060 + 10958632-10958871,10959006-10959272 29 3.1
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 29 4.1
04_03_0832 + 20139299-20139520,20139822-20141114,20142697-201428... 29 4.1
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195... 28 7.1
09_02_0513 - 10105746-10106438,10106523-10107040,10107156-101076... 27 9.4
>05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127
Length = 649
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 497 EDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVL 372
ED+ E L + P L R GD T LHYA +I ++ +L
Sbjct: 202 EDMTESLRLSMPMLTRRGDDFGNTALHYATSAGRIRVVNLLL 243
>12_01_0774 +
7063465-7064011,7065183-7065791,7067905-7068464,
7069411-7069530
Length = 611
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = -1
Query: 563 NLARSQNSFG*NRITRRRIAQHEDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESL 384
N +Q G N + + Q+ ++V L + PEL D ++ TPLH+A + S+
Sbjct: 363 NDTSAQGPKGQNALHAAAVLQNREMVNILLEKKPELASGVDDMKSTPLHFASS-DGAYSI 421
Query: 383 SRVLIKAGAKRVLKDLKGR 327
++ +K + D G+
Sbjct: 422 VHAILYPKSKSLFGDPAGQ 440
>09_04_0711 +
19666277-19666283,19666836-19666954,19667068-19667277,
19667362-19667510,19667588-19667759,19668323-19668415,
19668522-19668661,19668752-19668851
Length = 329
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -1
Query: 434 ERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQPSYY--FMNKSDILRLKE 276
+ TPLHYA G + E + +L+K GA ++L G+ P N+ ++L++ E
Sbjct: 271 KNTPLHYAAGYGRKECVD-LLLKHGAAVTPQNLDGKTPIEVAKLNNQDEVLKVLE 324
>09_02_0297 -
7051592-7052469,7053197-7053302,7053396-7053471,
7053581-7053648
Length = 375
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = -1
Query: 563 NLARSQNSFG*NRITRRRIAQHEDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESL 384
NL R++N G + + + H +IV+ L L +I D + +PL+ A+ + + + +
Sbjct: 270 NLLRARNLEGQTCLHKAILLGHTEIVKYLVSQDEGLAQIVDNEDISPLYLAIALRRGDIV 329
Query: 383 SRVLIKA 363
+ IKA
Sbjct: 330 QELTIKA 336
>08_02_1423 +
26975466-26975508,26976253-26976365,26976505-26976561,
26976607-26976801,26976912-26977060,26977145-26977307,
26977865-26977957,26978075-26978158,26978865-26979004,
26979093-26979192
Length = 378
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -1
Query: 434 ERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQ--PSYYFMNKSDILRLKEEE 270
+ TPLHYA G ++ +L+K GA L+++ G+ N+ ++LRL E++
Sbjct: 320 KNTPLHYAAGY-GMKGCVDLLLKNGAAVTLENMDGKTAIDVAKLNNQDEVLRLLEKD 375
>03_02_0171 +
6126685-6127107,6127237-6127581,6127701-6127997,
6129763-6129990,6130716-6131036
Length = 537
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 408 GSRKDRVPKSSSNKSWS-KTRPQGSQGSTAILLLHEQIRHTAA 283
GSR R P +SS +SWS + G+ TA H + RHT A
Sbjct: 303 GSRHSRKPSASSQRSWSGGSTNAGASRDTA--ASHGRSRHTVA 343
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -1
Query: 443 DILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKD 339
D RTPLH+ + K ++L++ L+K GA+ +KD
Sbjct: 589 DFHGRTPLHHCVR-RKNDALTKHLLKRGARTTIKD 622
>12_01_1060 + 10958632-10958871,10959006-10959272
Length = 168
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = -1
Query: 515 RRIAQHEDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDL 336
RRI Q +I+++ N+PE R+G R L MG E I + + + KD
Sbjct: 73 RRIIQESEIMKEDDNNWPEPDRVG----RQELEIVMGNEHISFTTSKIGSLVDVQTSKDP 128
Query: 335 KGRQPSYYFM 306
+G + YY +
Sbjct: 129 EGLRIFYYLV 138
>10_08_0573 + 18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 32 KFRVPSSSLHNYYIENFILNIAERNKCTL 118
KFR P N+ IEN LN+ + KCT+
Sbjct: 1019 KFRSPPGIKSNFEIENPALNLYDFKKCTV 1047
>04_03_0832 +
20139299-20139520,20139822-20141114,20142697-20142822,
20143322-20143442,20144213-20144481
Length = 676
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -1
Query: 497 EDIVEQLAQNYPELLR-IGDILERTPLHYA 411
E++V QL +N+P LLR + D+ E L++A
Sbjct: 467 EEVVRQLRKNHPSLLRQLADLEEHICLYFA 496
>03_01_0251 -
1956985-1957058,1957238-1957361,1957646-1957744,
1957821-1957919,1958097-1958195,1958306-1958404,
1958744-1958820,1959232-1959952
Length = 463
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 428 TPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQP 321
TPLH A+ ++ + + +LIK GA R LK G P
Sbjct: 369 TPLHLAVQTQRTDIVKLLLIK-GADRTLKTQDGFTP 403
>09_02_0513 -
10105746-10106438,10106523-10107040,10107156-10107695,
10107791-10108103
Length = 687
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -1
Query: 494 DIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGR 327
+I+ L Q+ P + I D TPLH A + ++ + +L + L D +GR
Sbjct: 319 EIISMLIQSMPSAMYIPDKEGLTPLHVAAKMGHLDVIQDMLKECPDSAELVDNEGR 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,158,572
Number of Sequences: 37544
Number of extensions: 280440
Number of successful extensions: 692
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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