Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0366
(632 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.063
SB_6911| Best HMM Match : Ank (HMM E-Value=0) 33 0.15
SB_43843| Best HMM Match : Ank (HMM E-Value=1.1e-12) 33 0.19
SB_29729| Best HMM Match : Ank (HMM E-Value=0.0055) 33 0.19
SB_52451| Best HMM Match : Ank (HMM E-Value=0) 32 0.34
SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10) 32 0.34
SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_19818| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 29 2.4
SB_14324| Best HMM Match : Ank (HMM E-Value=1.7e-28) 29 2.4
SB_46119| Best HMM Match : Ank (HMM E-Value=9.8e-16) 29 3.1
SB_15006| Best HMM Match : Stig1 (HMM E-Value=2) 29 3.1
SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_51164| Best HMM Match : SOCS_box (HMM E-Value=8e-10) 28 5.5
SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_33875| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 34.7 bits (76), Expect = 0.063
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = -1
Query: 431 RTPLHYAM-----GVEKIESLSRVLIKAGAKRVLKDLKGRQPSYY 312
RTPLHYA+ G E + ++IK G +D+KGR P +Y
Sbjct: 425 RTPLHYAVNATTGGFESLTETEDLVIKHGGDIAAQDIKGRIPLHY 469
>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
Length = 1961
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 491 IVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQPSYY 312
++ L Y + D++ +TP HYA+ + +L R L K GA +D +G + Y
Sbjct: 1145 VLSLLVAEYKVDVNSRDLIGKTPFHYAVKCKAAGALKR-LFKLGANIHAEDDEGNKAHYV 1203
Query: 311 FMNKSDIL 288
F + D +
Sbjct: 1204 FEDLQDAI 1211
>SB_43843| Best HMM Match : Ank (HMM E-Value=1.1e-12)
Length = 389
Score = 33.1 bits (72), Expect = 0.19
Identities = 24/82 (29%), Positives = 40/82 (48%)
Frame = -1
Query: 518 RRRIAQHEDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKD 339
+R + E ++++ +L + D TPLHYA + E + +L++AGA LKD
Sbjct: 125 KRHMRSLEVLIQRETYFSDQLNKGADFSGFTPLHYAALSDSYECV-HLLLQAGADPTLKD 183
Query: 338 LKGRQPSYYFMNKSDILRLKEE 273
G P Y K +I + +E
Sbjct: 184 DSGHLPISY-CGKENIKQTLQE 204
>SB_29729| Best HMM Match : Ank (HMM E-Value=0.0055)
Length = 222
Score = 33.1 bits (72), Expect = 0.19
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 494 DIVEQLAQNYP-ELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLK--GRQ 324
DI+ L +++ + D RTPLHYA V S + +L++ GA +L+DLK GRQ
Sbjct: 113 DIIHALVDKQGGKIVNLQDNRGRTPLHYAAAVSANRS-AAILLRHGAS-ILRDLKKLGRQ 170
>SB_52451| Best HMM Match : Ank (HMM E-Value=0)
Length = 301
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = -1
Query: 500 HEDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQP 321
H + L QN L + + ++PL A G+ + + ++L++ G++ L+D +GR P
Sbjct: 51 HLGVARLLIQNGSSLNAVDNAEHQSPLFPASGMPGNKQMVQLLLEQGSECHLRDKRGRTP 110
Query: 320 SYY 312
++
Sbjct: 111 LHF 113
>SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)
Length = 218
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -1
Query: 431 RTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQPSYYFMNK 300
+TPLH A G IES+ R+L+ GA D +GR P NK
Sbjct: 159 QTPLHKAAGKGNIESV-RLLLTRGADVNFADKQGRTPMLLAWNK 201
>SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -1
Query: 500 HEDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQP 321
H D++ L+ Y L + DIL TPLH A +++ L+K GA ++D G P
Sbjct: 656 HADVIRVLSA-YVNSLDVSDILGDTPLHLAAYFGHTKAV-ETLLKLGANPKMEDKAGFTP 713
>SB_19818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -1
Query: 500 HEDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQP 321
H++ VE L ++L D RTP+H+A + L ++ AG VL D +G P
Sbjct: 34 HDESVEALLHKEADVL-CRDCTGRTPIHFAAACGHVGILGALVQVAGTTSVLDD-RGYTP 91
Query: 320 SYY 312
++
Sbjct: 92 LHW 94
>SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1179
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -1
Query: 503 QHEDIVEQLAQNYP-ELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGR 327
+H D L +L+ GD R PLH+A ++E + ++L+ GA +D+ GR
Sbjct: 757 KHLDTARMLCDKCDADLINAGDRDLRVPLHHAASNAQLEMI-KLLLAHGAHLGPRDVFGR 815
Query: 326 QP 321
P
Sbjct: 816 TP 817
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = -1
Query: 494 DIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQPSY 315
DIV+ L + ++ + D ++ LH+A V E S L K GAK+ ++D KG+ P +
Sbjct: 1634 DIVKDLIKASCKVNNV-DAQGKSALHWAAAVNSHEVTSE-LCKNGAKKDMQDDKGQTPLF 1691
>SB_14324| Best HMM Match : Ank (HMM E-Value=1.7e-28)
Length = 631
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -1
Query: 503 QHEDIVEQLAQNYP-ELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGR 327
+H D L +L+ GD R PLH+A ++E + ++L+ GA +D+ GR
Sbjct: 2 KHLDTARMLCDKCDADLINAGDRDLRVPLHHAASNAQLEMI-KLLLAHGAHLGPRDVFGR 60
Query: 326 QP 321
P
Sbjct: 61 TP 62
>SB_46119| Best HMM Match : Ank (HMM E-Value=9.8e-16)
Length = 374
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -1
Query: 425 PLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQPSY 315
PLH A+ + S +RVL++ G KDL+G+ P Y
Sbjct: 293 PLHKAVECGSL-SCARVLLRQGVDVDAKDLRGKTPLY 328
>SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)
Length = 991
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -1
Query: 398 KIESLSRVLIKAGAKRVLKDLKG---RQPSYYFMNKSD 294
K+E +S++ K K++ K LK R YY++NK+D
Sbjct: 947 KLEIISKIYTKFTEKKIRKPLKEIIIRDAFYYYLNKAD 984
>SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/75 (24%), Positives = 38/75 (50%)
Frame = -1
Query: 506 AQHEDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGR 327
A+ + Q+ + +R D TPLH ++G + +S +L++ GA+ + +++G
Sbjct: 607 AEGNRTITQMLLAFGANVRAKDSAFCTPLHLSVGKLQNLEVSHLLVEHGARILENNIQGV 666
Query: 326 QPSYYFMNKSDILRL 282
+P M ++ RL
Sbjct: 667 RPVDLEMQLKEMQRL 681
>SB_51164| Best HMM Match : SOCS_box (HMM E-Value=8e-10)
Length = 322
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -1
Query: 494 DIVEQLAQNYPELLRIGDILERTPLHYAM---GVEKIESL 384
D++E L + +PE++ I + TPLH A+ E IESL
Sbjct: 117 DMLELLLEYWPEIINIKNFQADTPLHVAVMEGYTEYIESL 156
>SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 86 LNIAERNKCTLKSIKKHSLNQRVPFYLPIRFLVFNFLTLEIQ 211
+NIA T I HSL+ RV F+ + +L F + L+++
Sbjct: 188 INIASVYHFTATCIILHSLSLRVSFHCDLHYLSFVIVALQVE 229
>SB_33875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 431 RTPLHYAMGVEKIESLSRVLIKAGAKRVLKD 339
RTP+H + E++E ++ +L++ GA+ + D
Sbjct: 205 RTPMHEVVTSEEVEPITHLLVEYGARCDITD 235
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,681,688
Number of Sequences: 59808
Number of extensions: 319511
Number of successful extensions: 933
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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