Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0366
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.5  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   9.9  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -3

Query: 429 NSPTLRDGSRKDRVPKSSSNKSWSKTRPQGSQGSTAILLLHEQIRHTAAQRGR 271
           N    R  S  +   ++ SN S +KT+ +   G+T   + ++++     +R R
Sbjct: 213 NGKRKRKSSTIENESETESNASSTKTKMRRKSGATFEEIQNQRVMANVRERQR 265


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 529  FYPNEFWLRAKFLPSP 576
            F P  FW    F+PSP
Sbjct: 1158 FTPFNFWNPPPFMPSP 1173


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 503 QHEDIVEQLAQNYPELLRIGDILERTPLHYAM 408
           QH DI+ +L +  P+L  +  +     L + M
Sbjct: 380 QHPDILRELLKKIPDLRTLNTLHSEKLLAFKM 411


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 119 LKCTYFFLQCLK*NFLYNSYVMNLK 45
           L+CT+FFL  +     + +  M++K
Sbjct: 5   LRCTFFFLSVILITSYFVTPTMSIK 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,458
Number of Sequences: 438
Number of extensions: 3360
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)