Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0366
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g34050.1 68414.m04221 ankyrin repeat family protein contains ... 34 0.090
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC... 30 1.1
At5g04700.1 68418.m00478 hypothetical protein 29 1.9
At2g17390.1 68415.m02008 ankyrin repeat family protein contains ... 29 1.9
At2g01680.1 68415.m00095 ankyrin repeat family protein contains ... 29 1.9
At4g35450.4 68417.m05039 ankyrin repeat family protein / AFT pro... 29 2.6
At4g35450.3 68417.m05038 ankyrin repeat family protein / AFT pro... 29 2.6
At4g35450.2 68417.m05037 ankyrin repeat family protein / AFT pro... 29 2.6
At4g35450.1 68417.m05036 ankyrin repeat family protein / AFT pro... 29 2.6
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 29 3.4
>At1g34050.1 68414.m04221 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 573
Score = 33.9 bits (74), Expect = 0.090
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = -1
Query: 509 IAQHEDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVLIKAG---AKRVLKD 339
+ ++ DI ++ + +P+L D TPLH+A +E ++++L++ A+RV KD
Sbjct: 159 LGEYTDIARRMLERFPKLAWNADGELSTPLHHACNANNLE-ITKMLLEIDESLAERVNKD 217
Query: 338 LKGRQPSYYFMNKSDILRLKEEED 267
G P + K I LKE D
Sbjct: 218 --GFTPLHLAAMKCSIPILKEFSD 239
>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
putative similar to acyl-CoA binding protein 2
[Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 338
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -1
Query: 500 HEDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQP 321
H ++ E L ++ D +T LHYA+ E+ E+L+ L+K A +KD G P
Sbjct: 263 HLNVAEALVDKNADV-NAKDNEGQTSLHYAVVCER-EALAEFLVKQKADTTIKDEDGNSP 320
>At5g04700.1 68418.m00478 hypothetical protein
Length = 669
Score = 29.5 bits (63), Expect = 1.9
Identities = 24/83 (28%), Positives = 40/83 (48%)
Frame = -1
Query: 551 SQNSFG*NRITRRRIAQHEDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVL 372
SQN+ +T ++ + +I E L P+LL I I + P+ A+ ++E ++R L
Sbjct: 147 SQNASYHTPLTVVAVSGNMEIAEALVAKNPKLLEIPGINGQIPVVVAVENTQME-MARYL 205
Query: 371 IKAGAKRVLKDLKGRQPSYYFMN 303
+VL D G S F+N
Sbjct: 206 YTRTPVQVLLDQDGYHGSLLFLN 228
>At2g17390.1 68415.m02008 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 344
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -1
Query: 434 ERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQP--SYYFMNKSDILRLKEEE 270
+ TPLHYA G + E +S +L++ GA +++ + P N+ D+++L E++
Sbjct: 286 KNTPLHYAAGYGRKECVS-LLLENGAAVTQQNMDNKNPIDVARLNNQLDVVKLLEKD 341
>At2g01680.1 68415.m00095 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 532
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -1
Query: 500 HEDIVEQLAQNYPELLRIGDILERTPLHYAMGVEKIESLSRVL 372
H IV++L + +PEL RI D +PL+ A + +E ++ +L
Sbjct: 106 HLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAML 148
>At4g35450.4 68417.m05039 ankyrin repeat family protein / AFT
protein (AFT) contains ankyrin repeats, Pfam:PF00023;
identical to cDNA AFT protein (AFT) GI:3478699
Length = 304
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1
Query: 434 ERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQP 321
+ TPLHYA G + E +S +L++ GA L++L + P
Sbjct: 246 KNTPLHYAAGYGRKECVS-LLLENGAAVTLQNLDEKTP 282
>At4g35450.3 68417.m05038 ankyrin repeat family protein / AFT
protein (AFT) contains ankyrin repeats, Pfam:PF00023;
identical to cDNA AFT protein (AFT) GI:3478699
Length = 342
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1
Query: 434 ERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQP 321
+ TPLHYA G + E +S +L++ GA L++L + P
Sbjct: 284 KNTPLHYAAGYGRKECVS-LLLENGAAVTLQNLDEKTP 320
>At4g35450.2 68417.m05037 ankyrin repeat family protein / AFT
protein (AFT) contains ankyrin repeats, Pfam:PF00023;
identical to cDNA AFT protein (AFT) GI:3478699
Length = 342
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1
Query: 434 ERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQP 321
+ TPLHYA G + E +S +L++ GA L++L + P
Sbjct: 284 KNTPLHYAAGYGRKECVS-LLLENGAAVTLQNLDEKTP 320
>At4g35450.1 68417.m05036 ankyrin repeat family protein / AFT
protein (AFT) contains ankyrin repeats, Pfam:PF00023;
identical to cDNA AFT protein (AFT) GI:3478699
Length = 342
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1
Query: 434 ERTPLHYAMGVEKIESLSRVLIKAGAKRVLKDLKGRQP 321
+ TPLHYA G + E +S +L++ GA L++L + P
Sbjct: 284 KNTPLHYAAGYGRKECVS-LLLENGAAVTLQNLDEKTP 320
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 435 GTNSPTLRDGSRKDRVPKS--SSNKSWSKTRPQGSQGSTA 322
G N+ TL DGS R+P S S +KS S R + GS A
Sbjct: 12 GENNTTLPDGSSGKRIPPSSPSGDKSPSSKRSKLGDGSGA 51
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,535,625
Number of Sequences: 28952
Number of extensions: 233845
Number of successful extensions: 621
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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