Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0364
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       25   0.70 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   3.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.9  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   6.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   6.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.6  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -1

Query: 197 LRKCGRKLPRYCDVNHDSKIS-ITEWMACLE-VTQVSQG-QTTEVT--KLPPNP 51
           +R+ GR    YC  NH S ++ ++    CL  V  +S G    E+   + PPNP
Sbjct: 301 MRELGRIFRAYCRENHASWVNHLSNIEDCLNYVPHISTGFSPYEILYGRTPPNP 354


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 141 NQHHRMDGVFGGHPGLARADNG 76
           N HH +   FG  P +  +D G
Sbjct: 214 NMHHILGNTFGLKPEMKTSDRG 235


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 540 GYCWCVHQDTGNLY 499
           G  W +H D+GN++
Sbjct: 211 GSFWSLHPDSGNMF 224


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 321 HFTMSPGAVPFPE 359
           +F + PGA+P P+
Sbjct: 237 NFNLPPGAIPVPD 249


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 617 GVAALVCTPNA 585
           G A  VCTPNA
Sbjct: 134 GAACQVCTPNA 144


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 617 GVAALVCTPNA 585
           G A  VCTPNA
Sbjct: 134 GAACQVCTPNA 144


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 633 DETESRCCRACMYPEC 586
           D+T    CRAC   +C
Sbjct: 85  DKTHRNQCRACRLKKC 100


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 633 DETESRCCRACMYPEC 586
           D+T    CRAC   +C
Sbjct: 85  DKTHRNQCRACRLKKC 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,244
Number of Sequences: 336
Number of extensions: 3307
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)