Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0364
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    29   0.43 
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.0  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   5.2  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   6.9  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    25   9.1  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   9.1  

>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 633 DETESRCCRACMYPECTGDERYARAQC-YRSTGYCW 529
           ++ +  CC  CM      D+ +   QC YR   +CW
Sbjct: 11  EDEDDMCCPLCMEEIDISDKNFKPCQCGYRVCRFCW 46


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 514 HGKPIPGSSVKDRRPDCDAAPQH 446
           HG P+  S + D + D DAA +H
Sbjct: 261 HGVPMRASGINDPKHDLDAATRH 283


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 348 PFPEAVILDAKKL--LSSFRKAAFV 416
           P PE+VI DAKKL  +  F K  F+
Sbjct: 497 PLPESVIEDAKKLPVIGDFLKIEFI 521


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 529 VRPPRHGKPIPGSSVKDRRPDCDAAPQHASPMRGCPEPTKAAFLKELR 386
           V PPR   P PG     R+P  DA  +  +P++  P PT A  ++E +
Sbjct: 32  VVPPR---PKPG-----RKPALDALGRRKAPIKPRPGPTSALSVEEAK 71


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 203 DSLRKCGRKLPRYCDVNHDSKISITEWMACLEVTQVSQGQTTEV 72
           D +R     LP+  ++N+D K S  E   CL+  +VS   T EV
Sbjct: 14  DVVRCLCDNLPKL-EINNDKKKSFEEVSKCLQNLRVSLCGTAEV 56


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 454 PQHASPMRGCPEPTKAAFLKELRSFFASRMTAS 356
           P++  P   CPE      L E+   F SR+T S
Sbjct: 249 PENGLPRDRCPESVLQQALHEINIEFRSRLTDS 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,590
Number of Sequences: 5004
Number of extensions: 53278
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)