Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0364
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0661 - 24100918-24101940 32 0.44
09_06_0137 - 21080263-21081894 31 0.58
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366... 29 2.3
02_03_0003 + 13697552-13697861,13698144-13698262 29 3.1
01_06_1094 - 34478538-34478624,34478860-34478931,34479154-344792... 29 3.1
05_07_0100 + 27679280-27680320 28 5.4
10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655 27 9.4
08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651... 27 9.4
01_05_0802 + 25363556-25364011 27 9.4
>01_05_0661 - 24100918-24101940
Length = 340
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 294 AACSSLEAPHFTMSPGAVPFPEAVILDAKKL--LSSFRKAAFVGSG 425
AA S APH M+ A PEA ++D +L L+ F K A +G G
Sbjct: 6 AAASPFAAPHEMMARPAAAAPEATMMDLGQLLRLTDFDKIANLGDG 51
>09_06_0137 - 21080263-21081894
Length = 543
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = -2
Query: 535 LLVRPPRHGKPIPGSSVKDRRPDCDAAPQHASPMRGCPEP 416
LL++P RH P SS + R CDAAP A P PEP
Sbjct: 3 LLLKPKRHLFP---SSARHLRRLCDAAPTLAPPPEPEPEP 39
>05_07_0212 +
28434612-28435931,28436012-28436044,28436557-28436670,
28436767-28437102,28437221-28437283,28437364-28437519,
28437650-28437715,28439074-28439310,28439403-28439678,
28440060-28440248,28440459-28440620
Length = 983
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = -2
Query: 535 LLVRPPRHGKPIPGSSVKDRRPDCDAAPQHASPMRGCPEPTKAAFLKELRSFFASRMTAS 356
LL++PP+ KPI + + A+P + P + + + + L + + S
Sbjct: 79 LLLKPPQ--KPIRANGPPESVNA--ASPSPSRPTLEDRDKVRESLDEVLEKAEKLKASTS 134
Query: 355 GNGTAPGDMVKWGASREEQAAT 290
GNG GD+ + GAS+ + +AT
Sbjct: 135 GNGIGNGDLRQNGASKPDSSAT 156
>02_03_0003 + 13697552-13697861,13698144-13698262
Length = 142
Score = 29.1 bits (62), Expect = 3.1
Identities = 27/93 (29%), Positives = 36/93 (38%)
Frame = +3
Query: 315 APHFTMSPGAVPFPEAVILDAKKLLSSFRKAAFVGSGHPLIGLACCGAASQSGRLSFTEE 494
A + M P A L AK LS ++ G+ P++GL C G
Sbjct: 51 AREYLMESSRSPLSNASSLIAKFNLSR-QQLKKQGAVTPVMGLWACNLIWDPG------- 102
Query: 495 PGIGFPCLGGRTNSIQLTCSTEREHNVHRQCIR 593
PGIG C G N + + +HNV C R
Sbjct: 103 PGIGLICTGKINNPRRGVSIAKAQHNVSYGCSR 135
>01_06_1094 -
34478538-34478624,34478860-34478931,34479154-34479222,
34479312-34479422,34480390-34480528,34480590-34480705,
34480821-34480968,34481058-34481215,34481654-34481827,
34482592-34483056
Length = 512
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2
Query: 445 ASPMRGCPEPTKAAFLKELRSFFASRMTASGNGTAPGDMVKWGASREEQ 299
ASP G AFL L F AS ++ APGD+ + EE+
Sbjct: 50 ASPSSGPGSAADTAFLASLDRFLASPRRSAAPAAAPGDLDAAIRAEEEE 98
>05_07_0100 + 27679280-27680320
Length = 346
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Frame = -2
Query: 523 PPRHGKPIPGSSVKDRRPDCDAAPQHASPM--------RGCPEPTKAAFLKELRSFFASR 368
PP PI S+V+ + P +P PM RG P P A +E + A+
Sbjct: 151 PPYFAMPIHPSAVR-KPPSPSPSPSPPPPMALPLPSYRRGSPLPAAALIQQEAAAAAAAA 209
Query: 367 MTASGNGTAPGDMVKWGASR 308
++ S + PGD A R
Sbjct: 210 VSDSEDSEGPGDNNNHNAQR 229
>10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655
Length = 719
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 513 CLGGR-TNSIQLTCSTEREHNVHRQCIRGTYKRGNT 617
CLGG + + Q + E H H CI + + GNT
Sbjct: 74 CLGGMCSGNGQALFTAECSHKFHFHCISSSVRHGNT 109
>08_02_0087 +
12163706-12163757,12164877-12164961,12165039-12165107,
12165757-12165869,12167570-12167681,12167784-12167927,
12169222-12169396,12169482-12169595,12169734-12169775,
12171093-12171193,12171515-12171623
Length = 371
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 276 CLTKIKISFRTTRVESVSPADKQRGLSEEVR*EAAS-LLRCQSRQQNQHHRM 124
CLTKIKI F R E S R S AA L+ +S QQ +H +
Sbjct: 255 CLTKIKIGF--VRYEQSSQCKSMRDSSVSYASAAAKVLVEDRSLQQGEHQNV 304
>01_05_0802 + 25363556-25364011
Length = 151
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 519 GGRTNSIQLTCSTEREHNVHRQCIRGTYKRGNTC 620
G ++ + L C EH H C+ + +GNTC
Sbjct: 101 GASSDPVNLPC----EHAFHANCVLAWFYKGNTC 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,908,740
Number of Sequences: 37544
Number of extensions: 420871
Number of successful extensions: 1429
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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