Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0364
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 49 3e-06
SB_53209| Best HMM Match : Thyroglobulin_1 (HMM E-Value=9.9e-15) 47 1e-05
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 47 1e-05
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 44 1e-04
SB_46244| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16) 43 2e-04
SB_10651| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16) 43 2e-04
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 39 0.003
SB_12519| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.4e-39) 39 0.003
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 39 0.003
SB_14365| Best HMM Match : Thyroglobulin_1 (HMM E-Value=8.9e-18) 34 0.084
SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26) 34 0.11
SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16) 34 0.11
SB_12860| Best HMM Match : Thyroglobulin_1 (HMM E-Value=9.2e-34) 33 0.15
SB_50833| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.1e-08) 32 0.34
SB_11223| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.6e-30) 32 0.34
SB_12772| Best HMM Match : Thyroglobulin_1 (HMM E-Value=4.4e-05) 31 0.59
SB_34621| Best HMM Match : Thyroglobulin_1 (HMM E-Value=4.4e-05) 31 0.59
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034) 31 1.0
SB_51191| Best HMM Match : Thyroglobulin_1 (HMM E-Value=2.3e-05) 29 2.4
SB_21099| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1e-25) 29 2.4
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31) 29 4.2
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27) 28 7.3
SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_8354| Best HMM Match : Pkinase (HMM E-Value=6.3e-15) 28 7.3
>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1120
Score = 49.2 bits (112), Expect = 3e-06
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTG 508
P+C D RY+ QC+ STGYCWCV+ +TG
Sbjct: 689 PQCDKDGRYSALQCHGSTGYCWCVNPETG 717
Score = 46.8 bits (106), Expect = 1e-05
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQ 517
P+CT + Y + QCY STGYCWCV Q
Sbjct: 201 PQCTPEGEYKQVQCYGSTGYCWCVDQ 226
Score = 34.7 bits (76), Expect = 0.064
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTGN 505
P C Y + QC+ S G+CWCV +GN
Sbjct: 330 PSCDVKGAYEKIQCWGSIGFCWCV-DSSGN 358
>SB_53209| Best HMM Match : Thyroglobulin_1 (HMM E-Value=9.9e-15)
Length = 104
Score = 47.2 bits (107), Expect = 1e-05
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTGNLY 499
P C D Y QC+ TGYCWCV+QD L+
Sbjct: 58 PSCENDGNYTNIQCHSQTGYCWCVNQDGNELW 89
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCW 529
PEC D Y QC+ TG CW
Sbjct: 26 PECKPDGTYEGMQCHVGTGLCW 47
>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1752
Score = 46.8 bits (106), Expect = 1e-05
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTGNLY 499
P C D Y QC+ TGYCWCV+QD L+
Sbjct: 353 PSCEDDGNYTNIQCHSQTGYCWCVNQDGNELW 384
Score = 44.4 bits (100), Expect = 8e-05
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
PECT D Y R QC+ TG+CWCV
Sbjct: 27 PECTADGGYERVQCHEVTGFCWCV 50
Score = 44.0 bits (99), Expect = 1e-04
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQ 517
P+CT D RY+ QC+ S+GYCWCV +
Sbjct: 898 PKCTVDGRYSPMQCHYSSGYCWCVDE 923
Score = 40.3 bits (90), Expect = 0.001
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P+CT + Y QC+ STG+CWCV
Sbjct: 704 PKCTPEGAYVTEQCHTSTGFCWCV 727
Score = 36.3 bits (80), Expect = 0.021
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P+C D Y QC R G CWCV Q+
Sbjct: 279 PKCRPDGSYEEVQCDRKLGECWCVDQN 305
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 597 YPECTGDERYARAQCYRSTG-YCWCVHQDTGN 505
YP C D Y QC+ + G CWCV + GN
Sbjct: 771 YPACLRDGNYREIQCHYAPGKQCWCV-DENGN 801
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
PEC D Y QC+ G CWCV
Sbjct: 563 PECDNDGTYKTRQCF--NGLCWCV 584
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -3
Query: 630 ETESRCCRACMYPECTGDERYARAQCYRSTGYCWCVHQDTG 508
+ E P D YA QC + G CWCV + G
Sbjct: 195 QQEQSVASGSFVPAFQADGSYASEQCDTAKGECWCVDEQGG 235
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 588 CTGDERYARAQCYRSTGYCWCVHQD 514
C D Y R QC +G CWCV ++
Sbjct: 500 CAEDGSYNRVQC--GSGLCWCVDKE 522
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 609 RACMYPECTGDERYARAQCYRSTGYCWCV 523
R P+C D + QC+ + CWCV
Sbjct: 828 RTSFIPQCKQDGTFDSIQCHALSCECWCV 856
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
PEC Y+ QC G+CWCV
Sbjct: 427 PECDQRGGYSPVQC-DGAGFCWCV 449
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P C + + QC + YCWCV
Sbjct: 633 PLCKENGMFRPVQCLAGSTYCWCV 656
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 44.0 bits (99), Expect = 1e-04
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P CT +Y R QC+ STGYCWCV
Sbjct: 3012 PACTSTGQYERVQCHSSTGYCWCV 3035
Score = 40.7 bits (91), Expect = 0.001
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQ 517
P C D + QC++S GYCWCV Q
Sbjct: 343 PRCRADGSFEEVQCHKSQGYCWCVDQ 368
Score = 39.9 bits (89), Expect = 0.002
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQ 517
P C D RY QC+ T YCWCV +
Sbjct: 845 PHCKSDGRYEEVQCHTGTKYCWCVDE 870
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P C D Y+R QC +STG CWC +D
Sbjct: 1570 PNCRPDGSYSRVQCDKSTGECWCSSED 1596
Score = 39.5 bits (88), Expect = 0.002
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 591 ECTGDERYARAQCYRSTGYCWCVH 520
+C D Y + QC+ STGYCWCV+
Sbjct: 1945 KCKHDGTYRQVQCHSSTGYCWCVN 1968
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTGN 505
P+C Y QC+ STG+CWCV D GN
Sbjct: 2941 PKCKSSGDYDTVQCHGSTGFCWCV-DDDGN 2969
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P C GD Y R QC G+CWCV+ D
Sbjct: 4440 PRCWGDGSYRRVQC-NPAGFCWCVNSD 4465
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTGN 505
PEC D Y QC+ +G+CWCV D GN
Sbjct: 2147 PECQVDGCYDSIQCHELSGFCWCVDSD-GN 2175
Score = 37.9 bits (84), Expect = 0.007
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
PEC D Y R QC + +G CWCV ++
Sbjct: 2748 PECQTDGSYNRVQCEQHSGQCWCVDEN 2774
Score = 37.5 bits (83), Expect = 0.009
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P+CT RY+ +C+ T YCWCV
Sbjct: 2870 PQCTSLGRYSAIECHAGTPYCWCV 2893
Score = 36.3 bits (80), Expect = 0.021
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P C Y QC +TG+CWCV +D
Sbjct: 2554 PRCDASGGYEPVQCLSTTGHCWCVDKD 2580
Score = 35.9 bits (79), Expect = 0.028
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P+C D Y QC S+G CWCV
Sbjct: 3157 PQCKEDGSYTNVQCLASSGECWCV 3180
Score = 35.1 bits (77), Expect = 0.048
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P C D Y QC+ S G CWCV
Sbjct: 2015 PRCRSDGSYDPIQCHESPGQCWCV 2038
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTGNLY 499
P+CT D + QC++ CWCV + +Y
Sbjct: 2481 PQCTKDGEFVPVQCHQEKKKCWCVDGNGNMIY 2512
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P C D RY QC T CWCV
Sbjct: 222 PRCKADGRYEEVQCEGRTHSCWCV 245
Score = 32.3 bits (70), Expect = 0.34
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P+CT Y QC T CWCV
Sbjct: 2409 PKCTASGGYEELQCNAGTNECWCV 2432
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQ 517
P CT + Y AQC ++ CWCV +
Sbjct: 1431 PRCTPEGGYEPAQCDPASHECWCVDE 1456
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P+C D + QC+ S YC+CV++D
Sbjct: 1363 PQCKADGNFQEKQCHGS--YCFCVNRD 1387
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P C D RY QC CWCV
Sbjct: 3370 PLCKPDGRYEEVQCRARWSQCWCV 3393
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 594 PECTG-DERYARAQCYRSTGYCWCVHQDTGNLY 499
P+C D Y++ QC + G CWCV + +Y
Sbjct: 2787 PDCKNPDGSYSKRQC--NNGKCWCVDEHGSEIY 2817
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P CT Y QC S+ CWCV
Sbjct: 501 PRCTNLGSYEPLQCSASSHECWCV 524
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P C Y QCYR +C+CV+QD
Sbjct: 756 PRCRPAGDYQFMQCYRE--HCYCVNQD 780
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -3
Query: 600 MYPECTGDERYARAQCYRSTGYCWC 526
+ P C D Y QC G CWC
Sbjct: 1619 LIPVCRDDGTYRDVQCSPHWGECWC 1643
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 591 ECTGDERYARAQCYRSTGYC 532
+C D+ YAR QC GYC
Sbjct: 1905 KCNQDDTYARVQCDYINGYC 1924
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P C D +Y QC+ S C+CV+Q+
Sbjct: 4371 PRCQPDGKYEPVQCHSS--ICYCVNQE 4395
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQ 517
P C D +Y QCY G C+CV Q
Sbjct: 4508 PRCHPDGQYDPIQCYT--GVCYCVDQ 4531
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYC 532
P CT + Y R QC + YC
Sbjct: 1691 PRCTSEGHYERVQCQEAECYC 1711
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQ 517
P C Y QC S GYCWCV +
Sbjct: 2668 PLCDVFGSYRPVQC-DSEGYCWCVER 2692
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P C Y QC+ ST CWCV
Sbjct: 3228 PNCDPQGGYESVQCHSST--CWCV 3249
>SB_46244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 44.0 bits (99), Expect = 1e-04
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTGNL 502
P+C+ D + QC+ STGYCWCV Q+ L
Sbjct: 49 PQCSADGSFESMQCWASTGYCWCVDQNGAEL 79
>SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)
Length = 187
Score = 42.7 bits (96), Expect = 2e-04
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTG 508
P+C D + QCY + GYCWCV + TG
Sbjct: 140 PKCQSDGSFVPMQCYPAIGYCWCVDEQTG 168
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 251 LERREWKAFHQLINSVDSLRKCGRKLPRYCDVNHDSKISITEWMACLEVTQVSQ 90
LE E F ++ +KC + YCD N D +IS EW AC V ++ +
Sbjct: 64 LEWSELHGFLRMSKKAIHPKKCSKTFVGYCDENQDQRISRNEWYACFGVQEIKR 117
>SB_10651| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)
Length = 74
Score = 42.7 bits (96), Expect = 2e-04
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTG 508
P+C D + QCY + GYCWCV + TG
Sbjct: 27 PKCQSDGSFVPMQCYPAIGYCWCVDEQTG 55
>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 42.7 bits (96), Expect = 2e-04
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTG 508
P+C D + QCY + GYCWCV + TG
Sbjct: 277 PKCQSDGSFVPMQCYPAIGYCWCVDEQTG 305
Score = 36.7 bits (81), Expect = 0.016
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 221 QLINSVDSLRKCGRKLPRYCDVNHDSKISITEWMACL 111
+++ + RKC RKL CD + D+ +S+ EW CL
Sbjct: 398 KMLGKIKRGRKCSRKLLADCDFDKDNGLSLNEWSYCL 434
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = -2
Query: 511 GKPIPGSSVKDRRPDCDAAPQHASPMRGCPEPTKAAFLKELRSFFASRMTASGNGTAPGD 332
GK IPG++ K DC P+R + K+L+ AS G+
Sbjct: 305 GKHIPGTTKKTNSLDCTRYTMQNGPLR-------SGGAKKLKGKKASLRRNQRRSARSGN 357
Query: 331 MVKWGA-SREEQAATWTY 281
+V WG + Q W +
Sbjct: 358 LVAWGTFLSDNQVLAWKF 375
>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/30 (60%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 594 PECTGDERYARAQC-YRSTGYCWCVHQDTG 508
PECT D Y+R QC RS+G CWC DTG
Sbjct: 1207 PECTADGGYSRVQCESRSSGPCWCA-DDTG 1235
Score = 37.1 bits (82), Expect = 0.012
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P+C D Y QC ++T YCWCV
Sbjct: 1777 PQCLDDGSYESVQCLQATQYCWCV 1800
Score = 34.3 bits (75), Expect = 0.084
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P C D Y QC TG CWCV
Sbjct: 651 PRCKADGNYEEVQCEGVTGECWCV 674
Score = 34.3 bits (75), Expect = 0.084
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P C D R+ QC +T CWCV D
Sbjct: 801 PTCKPDGRFEEVQCNPATSACWCVDSD 827
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P C D ++ QC TG CWCV
Sbjct: 1357 PRCKADGQFEEVQCNEWTGQCWCV 1380
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P CT D RY QCY YC+CV+ D
Sbjct: 730 PWCTPDGRYNWLQCYEF--YCFCVNVD 754
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 630 ETESRCCRACMYPECTGDERYARAQCYRSTGYCWCV 523
+ ++R P C D Y QC+ +GYC+CV
Sbjct: 1124 QAKARSSSFSYVPRCNSDGSYDDVQCF--SGYCFCV 1157
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -3
Query: 594 PECTGDERYARAQCYRS-TGYCWCVH 520
P C D Y QC + TG CWCV+
Sbjct: 1637 PRCAADGAYHVVQCDDTQTGECWCVN 1662
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P+C D Y QC CWCV
Sbjct: 869 PKCKQDGAYEEIQCNAIARQCWCV 892
>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1980
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P CT RY QCY ++G CWCV
Sbjct: 1253 PNCTSSGRYEHMQCYGTSGTCWCV 1276
Score = 37.5 bits (83), Expect = 0.009
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTGNL 502
P C D R+ QC TG+CWCV D+G +
Sbjct: 724 PRCKEDGRFEEIQCDHVTGFCWCV-DDSGTI 753
Score = 37.1 bits (82), Expect = 0.012
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQ 517
P+C RY QC+ TG CWCV +
Sbjct: 986 PQCKPTGRYEEVQCHTGTGLCWCVDE 1011
Score = 35.5 bits (78), Expect = 0.036
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P C D +A QC+ TG CWCV
Sbjct: 914 PTCRDDGSFAEVQCHGLTGQCWCV 937
Score = 35.1 bits (77), Expect = 0.048
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P+C Y QC TGYCWCV
Sbjct: 93 PQCKKTGHYEEVQCSAWTGYCWCV 116
Score = 33.5 bits (73), Expect = 0.15
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 591 ECTGDERYARAQCYRSTGYCWCV 523
+C D + QC+ +TG+CWCV
Sbjct: 1482 QCQPDGGFTPLQCHSATGFCWCV 1504
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 609 RACMYPECTGDERYARAQCYRSTGYCWCVHQDTGN 505
R P CTGD +Y QC+ S C+CV ++GN
Sbjct: 17 RGVFIPRCTGDGKYELQQCHGSV--CFCV-DESGN 48
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P CT D Y QC R CWCV
Sbjct: 1798 PSCTSDGSYEELQCIRDE--CWCV 1819
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 597 YPECTGDERYARAQCYRSTGYCWCV 523
+PEC D + QC + CWCV
Sbjct: 1868 FPECKADGSFTSLQCDPAKRVCWCV 1892
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P C D RY QCY CWCV
Sbjct: 518 PICKSDGRYEEVQCYGKE--CWCV 539
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTGNL 502
P CT D RY QC + C CV++D+G +
Sbjct: 160 PRCTEDGRYEAMQCRGLS--CSCVNRDSGTV 188
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P C D R+ QC CWCV +
Sbjct: 447 PLCKQDGRFEEVQCRGDVSECWCVDHE 473
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P CT D + QC+ S +C+CV+ D
Sbjct: 376 PWCTSDGHFNPMQCHGS--FCYCVYDD 400
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 514 HGKPIPGSSVKDRRPDCDAAPQHASPMR 431
+G IPGS + RPDC A Q S R
Sbjct: 940 NGIEIPGSVTRGHRPDCKKAAQTTSCQR 967
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P+C D Y AQC + CWCV
Sbjct: 1412 PKCAKDGSYKHAQCLGNV--CWCV 1433
>SB_12519| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.4e-39)
Length = 140
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P C D Y QC+ T YCWCV +D
Sbjct: 27 PRCADDGSYETVQCHDGTRYCWCVDED 53
Score = 37.5 bits (83), Expect = 0.009
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P CT D Y QC STG CWCV
Sbjct: 95 PRCTLDGAYEDVQCQESTGECWCV 118
>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 789
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGY---CWCVHQD 514
PECT D YAR QC+ + G+ CWCV ++
Sbjct: 530 PECTVDGSYARVQCFENHGFGRQCWCVDEN 559
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = -3
Query: 594 PECTGDERYARAQCY----RSTGYCWCVHQDTG 508
P+C D RY+ QCY T CWCV Q++G
Sbjct: 740 PDCEPDGRYSAVQCYTYPMSGTTVCWCVEQESG 772
>SB_14365| Best HMM Match : Thyroglobulin_1 (HMM E-Value=8.9e-18)
Length = 127
Score = 34.3 bits (75), Expect = 0.084
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P C D R+ QC +T CWCV D
Sbjct: 82 PTCKPDGRFEEVQCNPATSACWCVDSD 108
>SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26)
Length = 452
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTGNL 502
P+C + Y QC+ S G CWCV D +L
Sbjct: 187 PKCEKNGYYEPVQCWGSVGSCWCVTPDGKHL 217
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTG--YCWCVHQDTGNL 502
P C D Y QC+ YCWCV ++ G +
Sbjct: 95 PHCDSDGFYNPTQCHTKLDEEYCWCVDRNGGKI 127
>SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)
Length = 600
Score = 33.9 bits (74), Expect = 0.11
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = -2
Query: 535 LLVRPPRHGKPIPGSSVK---DRRPDCDAAPQHASP-MRGCPEPTKAAFLKELRSFFASR 368
L +RPP HG P +S R+PD P SP ++ PE TK+ K + S+
Sbjct: 158 LEIRPPAHGDEKPETSPSPQGHRKPDETTLPVEMSPVLKPKPEQTKSTSDKGKEASSDSK 217
Query: 367 MTASGNGTAPGDMVKWGASREEQA 296
+ N T D+ K A+ +E +
Sbjct: 218 GENTDNSTTAQDIEKALANAKENS 241
>SB_12860| Best HMM Match : Thyroglobulin_1 (HMM E-Value=9.2e-34)
Length = 337
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P C D RY QC T CWCV
Sbjct: 222 PRCKADGRYEEVQCEGRTHSCWCV 245
>SB_50833| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.1e-08)
Length = 280
Score = 32.3 bits (70), Expect = 0.34
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTGN 505
P C + Y R QC CWCV +TG+
Sbjct: 139 PRCDPNGAYHRVQCSIHLDKCWCVDTETGH 168
>SB_11223| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.6e-30)
Length = 147
Score = 32.3 bits (70), Expect = 0.34
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCV 523
P+CT Y QC T CWCV
Sbjct: 98 PKCTASGGYEELQCNAGTNECWCV 121
>SB_12772| Best HMM Match : Thyroglobulin_1 (HMM E-Value=4.4e-05)
Length = 213
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGY--CWCVHQDTG 508
P C+ D Y+ QC R G CW V ++TG
Sbjct: 93 PNCSNDGTYSETQCARRRGVTKCWRVDKNTG 123
>SB_34621| Best HMM Match : Thyroglobulin_1 (HMM E-Value=4.4e-05)
Length = 129
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGY--CWCVHQDTG 508
P C+ D Y+ QC R G CW V ++TG
Sbjct: 64 PNCSNDGTYSETQCARRRGVTKCWRVDKNTG 94
>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 3404
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 236 WKAFHQLINSVDSLRKCGRKLPRYCDVNHDSKISITEWMACLEV--TQVSQGQTTEVTKL 63
WK F + + + C LP +CDV +K+ +T A EV T ++ GQ VT +
Sbjct: 1806 WKPFEDPESDITKVTWCAGSLPGHCDVISSTKL-LTFATAVHEVLDTPMANGQRYYVTVI 1864
Query: 62 PPN 54
N
Sbjct: 1865 ATN 1867
>SB_51191| Best HMM Match : Thyroglobulin_1 (HMM E-Value=2.3e-05)
Length = 88
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQDTGNL 502
P CT D RY QC + C CV++D+G +
Sbjct: 41 PRCTEDGRYEAMQCRGLS--CSCVNRDSGTV 69
>SB_21099| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1e-25)
Length = 137
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P C D R+ QC CWCV +
Sbjct: 92 PLCKQDGRFEEVQCRGDVSECWCVDHE 118
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 594 PECTGDERYARAQCYRSTGYCWCVHQD 514
P CT D + QC+ S +C+CV+ D
Sbjct: 21 PWCTSDGHFNPMQCHGS--FCYCVYDD 45
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 173 AASYRTSSESPRCLSAGETLSTLVVLKLIFIFVKHHVSPRC 295
AAS +SS SP CLS G L ++++ +V+ + C
Sbjct: 977 AASSSSSSSSPPCLSRGILLIIIIIIPQALRYVRAGLGNEC 1017
>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 627 TESRCCRACMYPECTGDERYARAQCYRSTGYCWCVHQDTG 508
T ++ C+AC +C G C R TG C+C G
Sbjct: 125 TSAKGCKAC---DCNGHGDVTLGVCDRMTGQCFCKDNTEG 161
>SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31)
Length = 541
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 633 DETESRCCRACMYPECTGDERYARAQCYRSTGYCWC 526
D+T CRAC C D +Y +CY G C C
Sbjct: 474 DKTSPFACRAC---NC--DPQYTTGRCYDENGDCEC 504
>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 961
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = -2
Query: 565 SRSVLQVNWILLVRPPRHGKPIPGSSVKDRRPDCDAAPQ-----HASPMRGCP 422
S S+L+ + PP H P P S K P + P H S RGCP
Sbjct: 805 SVSILRTRRCPVSEPPTHKPPPPQYSAKRGCPGSEPPPHKPLPPHFSAKRGCP 857
>SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -2
Query: 556 VLQVNWI-LLVRPPRHGKPIPGSSVKDRRPDCDAAPQHASPMRGCPEPTKAAFLKELRSF 380
V+Q W+ ++RP R G +P + ++D + + QH +G T F L+ F
Sbjct: 125 VVQKEWLDPVLRPVRQGAHLPANQLRDSQRERSNVEQHEKRKQGL-RKTLPVFYTALQVF 183
Query: 379 FASRMTASG 353
+ A G
Sbjct: 184 PLLKRKAQG 192
>SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)
Length = 317
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 394 ELRSFFASRMTASGNGTAPGDMVKWGASREEQAATWTYV 278
+LRSF R GT P D + AS++E + W V
Sbjct: 262 DLRSFQCRRFCCCQRGTVPRDEKDFEASQDELSGYWERV 300
>SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1079
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 501 IGFPCLGGRTNSIQLTCSTEREHNVHRQCIRGTYKRGNTC 620
IG CLGG ++ TC+ + +C +G +KR + C
Sbjct: 428 IGGSCLGG----LESTCADGYTGTLCSECTKGRFKRAHIC 463
>SB_8354| Best HMM Match : Pkinase (HMM E-Value=6.3e-15)
Length = 280
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 242 REWKAFHQLINSVDSLRKCGRKLPRYCDVNHDSKISITEWMA 117
R+ K + L+N+ L+ C L R D +HD +TE++A
Sbjct: 37 RDLKPSNLLLNTTCDLKICDFGLARIADPDHDHTGFLTEYVA 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,286,340
Number of Sequences: 59808
Number of extensions: 464622
Number of successful extensions: 1470
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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