Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0364
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   3.3  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 187 HFLRESTLFISW*NAFH---SRRSKAYLYLCQA 276
           +F+ +ST+F+SW NA H    R    Y  +C A
Sbjct: 327 NFVDQSTVFLSW-NAPHMLGGRTDTTYRVVCDA 358


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 521 WTHQQYPVDL*H*ARA*RSSPVHSGYIQARQHLLSV 628
           WT+  Y VDL H A+   S+ +  G I    + +SV
Sbjct: 166 WTYDGYTVDLRHLAQTEDSNQIEVG-IDLTDYYISV 200


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 185 GRKLPRYCDVNHD 147
           G+K+PRYC   H+
Sbjct: 598 GKKMPRYCLFGHN 610


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 285 VHVAACSSLEAPHFTMSPGAVPFP 356
           + V  C +    HF   PG VP P
Sbjct: 24  IGVDECQATPVIHFLQYPGCVPKP 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,500
Number of Sequences: 438
Number of extensions: 4169
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)