Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0364
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08730.1 68418.m01037 IBR domain-containing protein contains ...    29   3.4  
At4g29920.1 68417.m04257 heat shock protein-related contains sim...    29   3.4  
At3g25010.1 68416.m03126 disease resistance family protein conta...    28   4.5  
At1g23330.1 68414.m02917 expressed protein                             28   6.0  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    28   6.0  
At5g59790.1 68418.m07495 expressed protein                             27   7.9  
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)...    27   7.9  
At2g36820.1 68415.m04515 expressed protein                             27   7.9  

>At5g08730.1 68418.m01037 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster]
          Length = 500

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -3

Query: 627 TESRCCRACMYP-ECTGDERYARAQCYRSTGYCW 529
           T ++ C  C  P +  GD  Y    C  S  +CW
Sbjct: 236 TNTKSCPKCKIPVQQNGDPNYRLINCICSNNFCW 269


>At4g29920.1 68417.m04257 heat shock protein-related contains
           similarity to heat shock protein 101 [Triticum aestivum]
           gi|6013196|gb|AAF01280
          Length = 1017

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 215 INSVDSLRKCGRKLPRYCDVNHDSKISITEWMA 117
           IN  D L    +K  R+C   H  K S+T W A
Sbjct: 511 INQKDELSGLRKKWNRFCQALHHKKPSMTAWRA 543


>At3g25010.1 68416.m03126 disease resistance family protein contains
           leucine rich-repeat (LRR) domains (23 copies)
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 881

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
 Frame = +3

Query: 384 LLSSFRKAAFVGSGHPLIGLACCGAASQSGRLSFTEEPGIGFPCLGGRTNSIQLTCSTER 563
           LLS    ++FV   +P++GL  CG         F  E            N +    ST  
Sbjct: 15  LLSCVSPSSFVTFNNPVVGLGACGPHQIQAFTQFKNEFNTRACNHSSPWNGVWCDNSTGA 74

Query: 564 EHNVH-RQCIRGTYKRGNTCFLF 629
              +    C+ GT K  ++ F F
Sbjct: 75  VTKIQFMACLSGTLKSNSSLFQF 97


>At1g23330.1 68414.m02917 expressed protein
          Length = 471

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 161 DVNHDSKISITEWMACLEVTQVSQGQTTEVTKLPP 57
           D+      SI +  + +EV Q+ Q +TT+V  LPP
Sbjct: 37  DLTQSLSESIFKPKSTIEVKQIDQEKTTDVNDLPP 71


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = -2

Query: 523 PPRHGKPIP-GSSVKDRRPDCDAAPQHASPMRGCPEPTKA 407
           PP   KP+P  S  K   P     P H  P +  P PT A
Sbjct: 89  PPPAPKPVPCPSPPKPPAPTPKPVPPHGPPPKPAPAPTPA 128


>At5g59790.1 68418.m07495 expressed protein
          Length = 423

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = -1

Query: 254 ALERREWKAFHQLINSVDSLRKCGRKLPRYCDVNHDSKISITEWMACLEVTQVSQGQTTE 75
           +++  E+K +    +S +S ++         D     +    E +  ++     + Q+TE
Sbjct: 182 SIDLSEYKVYKATESSAESTQRLAADASTQTDDRRRRRRPAKEEIEEVKSPASYENQSTE 241

Query: 74  VTK--LPPNPRRKGPNPLESILKAD 6
           +++  + P P    P  LE+++KAD
Sbjct: 242 LSRDEISPPPSDSSPETLENLIKAD 266


>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
           identical to myb-related transcription factor (CCA1)
           GI:4090569 from [Arabidopsis thaliana]
          Length = 608

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 110 EVTQVSQGQTTEVTKLPPNPRRKGPNP 30
           E   V+ GQ  ++   PP P+RK  NP
Sbjct: 77  EAKGVAMGQALDIAIPPPRPKRKPNNP 103


>At2g36820.1 68415.m04515 expressed protein 
          Length = 183

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 414 VGSGHPLIGLACCGAASQSGRLSFTEEPGI 503
           + S +PL+ L CC A S+ GR  F    G+
Sbjct: 113 IASLNPLLVLDCCYAVSRGGRRRFGNMAGV 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,541,741
Number of Sequences: 28952
Number of extensions: 306493
Number of successful extensions: 932
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)