Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0363
         (643 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    71   3e-11
UniRef50_UPI0000499DFD Cluster: phospholipid-transporting P-type...    33   5.9  
UniRef50_Q6C103 Cluster: Similarities with DEHA0C09570g Debaryom...    33   7.7  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=25; Arthropoda|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 986

 Score = 70.5 bits (165), Expect = 3e-11
 Identities = 36/47 (76%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
 Frame = -1

Query: 634 YKAQVRGLEGEYCSHPWARAPKYQLLPFDSIQKRAVWIVDNP-IRDR 497
           YKAQVR    EYCSH WA APKYQLLPFDSIQ+RAV IVDNP + DR
Sbjct: 822 YKAQVRP-RVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPGLTDR 867


>UniRef50_UPI0000499DFD Cluster: phospholipid-transporting P-type
           ATPase; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
           phospholipid-transporting P-type ATPase - Entamoeba
           histolytica HM-1:IMSS
          Length = 1166

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 402 SKYYMFYRS*KNSFHSPEIRIAIFNYGLFIIKRSLMGLSTIQTALFCIESNGSSWYL 572
           SK  +   S +  F   + R+  F +G+F  K  ++ ++TI  +LF + +   SWYL
Sbjct: 266 SKLALNQPSLRTKFAHTDARMNQFVFGIFCFKIVIVIVATIAGSLFLVRTGRDSWYL 322


>UniRef50_Q6C103 Cluster: Similarities with DEHA0C09570g
           Debaryomyces hansenii; n=1; Yarrowia lipolytica|Rep:
           Similarities with DEHA0C09570g Debaryomyces hansenii -
           Yarrowia lipolytica (Candida lipolytica)
          Length = 661

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +3

Query: 432 KNSFHSPEIRIAIFNYGLFIIKR---SLMGLSTIQTALFCIESNGSSWYLGALAHGWEQY 602
           +N+ H   +R++ F       +R   + + L+ +Q +  C++++G++W LG L H  E  
Sbjct: 42  ENTLHKFRVRVSAFLKSNDSRQRWCGAFLALAAVQNSWECLKNHGATW-LGMLIHILE-- 98

Query: 603 SPSRPRTWAL 632
            P  P TW +
Sbjct: 99  LPEAPATWEM 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,268,806
Number of Sequences: 1657284
Number of extensions: 13235211
Number of successful extensions: 28613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28609
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)