Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0363
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   4.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   7.0  

>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 331 PSIVGSSYVLISLHQFVLMYEKLHLSIICFTALKKT 438
           PS+ GS+    +L  F +    +HL II F  +  T
Sbjct: 450 PSVAGSAIAAFTLPSFAIAAVLVHLGIIMFDNMTTT 485


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 618 GASRGSTAPIRGPGLPNTSYFHLTLYRKEPFGLSIIPSE 502
           G S+  T+ I+   LP+   F L  Y  EP+ L  +P E
Sbjct: 385 GLSQAYTSTIQS-SLPSKEVFPLEKYSSEPWNLHNLPFE 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,043
Number of Sequences: 5004
Number of extensions: 60002
Number of successful extensions: 132
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)