Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0363
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342...    31   1.0  
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348...    29   4.1  
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83...    27   9.6  

>12_02_0356 +
           17915029-17916236,17932970-17933283,17933936-17934244,
           17934613-17935439
          Length = 885

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +1

Query: 265 SLFAPVS*YTVCFAATSSSIINPSIVGSSYVLISLHQFVLMYEKLHL----SIICFTALK 432
           SLFAP+     C  A  SS +  S+  S    +S H+ V M+E+LH      I+ F ALK
Sbjct: 341 SLFAPL-----CLMAKGSSKVT-SLSDSESDDVSYHELVSMFEELHAYSEKEIVKFKALK 394

Query: 433 K 435
           K
Sbjct: 395 K 395


>01_06_1626 -
           38734128-38734160,38734386-38734560,38734819-38734878,
           38734961-38735059,38735191-38735224,38735315-38735374,
           38735596-38735696,38735949-38736014,38736695-38736825,
           38736946-38737038,38737273-38737338,38737459-38737494,
           38738308-38738382,38738475-38738792
          Length = 448

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 522 IQTALFCIESNGSSWYLGALAHGWEQYSPSRP 617
           +   L CI SN   WYL  L   WE +  + P
Sbjct: 390 VAAGLRCIVSNQDKWYLDHLDATWEGFYTNEP 421


>05_01_0121 -
           833885-833949,834180-834430,834545-834604,834893-834926,
           835746-835805,836409-836509,836939-837039,837209-837289,
           837580-837650,837738-837849,838138-838173,838865-838951,
           839055-839396
          Length = 466

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 522 IQTALFCIESNGSSWYLGALAHGWEQYSPSRP 617
           ++    CI SN   WYL  L   W+ +  S P
Sbjct: 372 VEKGFRCIMSNQGVWYLDHLDVPWQDFYTSEP 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,147,573
Number of Sequences: 37544
Number of extensions: 344972
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)