Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0363
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53921| Best HMM Match : Viral_P18 (HMM E-Value=2.6)                 31   1.1  
SB_52416| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_36270| Best HMM Match : Viral_P18 (HMM E-Value=4.9)                 31   1.1  
SB_29973| Best HMM Match : RVT_1 (HMM E-Value=5.2e-21)                 31   1.1  
SB_23599| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_55213| Best HMM Match : Viral_P18 (HMM E-Value=2.6)                 31   1.1  
SB_52244| Best HMM Match : RVT_1 (HMM E-Value=9.5e-20)                 31   1.1  
SB_43560| Best HMM Match : DUF633 (HMM E-Value=4.4)                    31   1.1  
SB_43494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_38378| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   4.2  
SB_10779| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_45995| Best HMM Match : Cna_B (HMM E-Value=4.2)                     27   9.8  

>SB_53921| Best HMM Match : Viral_P18 (HMM E-Value=2.6)
          Length = 322

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 634 YKAQVRGLEGEYCSHPWARAPKYQLLPFDSIQKRAVWIV 518
           Y A +R +  EY S  WA  P+Y     +SIQKRA+ I+
Sbjct: 202 YCALIRSVL-EYASPVWAALPEYLSEHLESIQKRALKII 239


>SB_52416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 634 YKAQVRGLEGEYCSHPWARAPKYQLLPFDSIQKRAVWIV 518
           Y A +R +  EY S  WA  P+Y     +SIQKRA+ I+
Sbjct: 331 YCALIRSVL-EYASPVWAALPEYLSEHLESIQKRALKII 368


>SB_36270| Best HMM Match : Viral_P18 (HMM E-Value=4.9)
          Length = 283

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 634 YKAQVRGLEGEYCSHPWARAPKYQLLPFDSIQKRAVWIV 518
           Y A +R +  EY S  WA  P+Y     +SIQKRA+ I+
Sbjct: 202 YCALIRSVL-EYASPVWAALPEYLSEHLESIQKRALKII 239


>SB_29973| Best HMM Match : RVT_1 (HMM E-Value=5.2e-21)
          Length = 499

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 634 YKAQVRGLEGEYCSHPWARAPKYQLLPFDSIQKRAVWIV 518
           Y A +R +  EY S  WA  P+Y     +SIQKRA+ I+
Sbjct: 422 YCALIRSVL-EYASPVWAALPEYLSEHLESIQKRALKII 459


>SB_23599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 634 YKAQVRGLEGEYCSHPWARAPKYQLLPFDSIQKRAVWIV 518
           Y A +R +  EY S  WA  P+Y     +SIQKRA+ I+
Sbjct: 164 YCALIRSVL-EYASPVWAALPEYLSEHLESIQKRALKII 201


>SB_55213| Best HMM Match : Viral_P18 (HMM E-Value=2.6)
          Length = 371

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 634 YKAQVRGLEGEYCSHPWARAPKYQLLPFDSIQKRAVWIV 518
           Y A +R +  EY S  WA  P+Y     +SIQKRA+ I+
Sbjct: 202 YCALIRSVL-EYASPVWAALPEYLSEHLESIQKRALKII 239


>SB_52244| Best HMM Match : RVT_1 (HMM E-Value=9.5e-20)
          Length = 523

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 634 YKAQVRGLEGEYCSHPWARAPKYQLLPFDSIQKRAVWIV 518
           Y A +R +  EY S  WA  P+Y     +SIQKRA+ I+
Sbjct: 403 YCALIRSVL-EYASPVWAALPEYLSEHLESIQKRALKII 440


>SB_43560| Best HMM Match : DUF633 (HMM E-Value=4.4)
          Length = 284

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 634 YKAQVRGLEGEYCSHPWARAPKYQLLPFDSIQKRAVWIV 518
           Y A +R +  EY S  WA  P+Y     +SIQKRA+ I+
Sbjct: 164 YCALIRSVL-EYASPVWAALPEYLSEHLESIQKRALKII 201


>SB_43494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 627 PKCGASRGSTAPIRGPGLPNTSYFHLTLYRKEPFGLSIIPSEIVL 493
           P  GA RGS         P+ + +HL   R  P+GL++   E++L
Sbjct: 493 PPIGAWRGSDDNGYISAEPSPALYHLNFQRCLPYGLTVARGEVLL 537


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 244 TTCGSYNSLFAPVS*YTVCFAATSSSI 324
           TT G+Y +LFAP++ YT  FA  +  I
Sbjct: 10  TTLGNYTNLFAPLANYTNLFAPLAKYI 36


>SB_38378| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 478

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 513 LSTIQTALFC-IESNGSSWYLGALAHGWEQYSPSRPRT 623
           LS I+  LF  IE +G  W+L     GW Q   SR  T
Sbjct: 31  LSLIKGELFAVIEKSGEHWWLAKNIRGWFQPEMSRQMT 68


>SB_10779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 573 PNTSYFHLTLYRKEPFGLSIIPSEIV 496
           PNTSY+HL   +K  + +  +P E +
Sbjct: 781 PNTSYYHLNTIQKSKYPVRWLPLETI 806


>SB_45995| Best HMM Match : Cna_B (HMM E-Value=4.2)
          Length = 171

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = -2

Query: 627 PKCGASRGSTAPIRGPGLPNTSYFHLTLYRKEPFGLSIIPSEI 499
           P C  + G+      P +P+  Y  +  Y+ E     ++PS++
Sbjct: 99  PLCQVNSGADGTFTFPAVPSGEYILVPFYQGEHITFDVVPSKL 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,129,183
Number of Sequences: 59808
Number of extensions: 399599
Number of successful extensions: 828
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)