Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0363
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR...    28   4.6  
At2g23370.1 68415.m02791 expressed protein                             28   4.6  

>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1981

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 21/46 (45%), Positives = 27/46 (58%)
 Frame = +1

Query: 313 SSSIINPSIVGSSYVLISLHQFVLMYEKLHLSIICFTALKKTAFIL 450
           SS +  PS +G++  L +L    L   KL LSI+ FT LKK  FIL
Sbjct: 746 SSLVELPSSIGNAINLQNLDLGCLRLLKLPLSIVKFTNLKK--FIL 789


>At2g23370.1 68415.m02791 expressed protein
          Length = 340

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 586 WARAPKYQLLPFDSIQKRAVWIVDNPIRDRFI 491
           W  AP    +P   +QK  VW + N + D+FI
Sbjct: 96  WPTAPSSMEMPVVEVQKHGVWFLANNV-DQFI 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,183,310
Number of Sequences: 28952
Number of extensions: 289749
Number of successful extensions: 609
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)