Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0362
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    27   2.1  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    25   4.7  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    25   4.7  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   6.3  
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.3  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   6.3  
SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.3  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   8.3  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 368 CILTYNFLNINFLGVIIIYLF 430
           C L  +FL+++F GV+ I+LF
Sbjct: 284 CCLDPHFLHLSFSGVLFIFLF 304


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 345 VHHQLGKLALYNHSDVFWKFTY 280
           +H + G L + +HS  F  FTY
Sbjct: 395 LHEEFGNLTIGSHSSAFQGFTY 416


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 329 VSSPCTIIPMFFGSLHTIMFTTIK 258
           V  P T IP+F   LH ++  TIK
Sbjct: 480 VQGPGTFIPIFVDKLHQLINETIK 503


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = -3

Query: 172 HNIIY*NSSSFSP---PYLTKWGRHS*-FFSSILYQPSSQHSLLFLSYRHSHTPSM 17
           HN+   NSSS +    P +   G+ S  F SS+   PS+ +S LF  Y H   PS+
Sbjct: 164 HNVPTNNSSSATSSTKPSVQSVGQASYPFLSSVSNFPSNFNSELFPFYFHDVVPSI 219


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 238 IRCDCESIG*RPFKKSKDRSGIHNIIY*NSSSFSPPY-LTKWGRHS 104
           ++ + E I  +P+K   ++S I N++  N+ +F P Y + K G+ S
Sbjct: 15  LKSNDEYISMQPYKGEDNKSYIANLVRHNALTFCPYYFIEKSGKGS 60


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 388 FKHKFFRGYYYLFIFY 435
           F H+ + GY +L+IFY
Sbjct: 381 FTHRGYTGYAFLYIFY 396


>SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 384 LYVSIQQRKIIRCVHHQLGKLALYNHSDVFWKFTYNNVY 268
           LY  +Q  K +RC+ +   ++ LY H       + N++Y
Sbjct: 62  LYTIVQYFKSLRCLRNGRTEVRLYTHYKRHLPRSVNSIY 100


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 68   R*RLIENGREKLAVPTPLSEIRWRKRR 148
            R RL +N +E L+  +P S + W KR+
Sbjct: 1000 RERLDDNAKEILSRSSPKSPVAWFKRK 1026


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,293
Number of Sequences: 5004
Number of extensions: 38535
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)