Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0362
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    29   2.7  
01_07_0098 - 41071997-41072248,41072387-41072519,41072694-410728...    27   6.3  

>03_05_0001 -
           19386264-19386284,19386446-19386517,19386614-19387357,
           19387454-19388884,19388953-19389118,19392035-19392114,
           19392393-19392462,19392550-19392761,19392837-19392890,
           19393471-19393623,19393715-19393930,19394029-19394248,
           19394332-19394399,19394510-19394643,19394755-19394854,
           19394943-19395421,19395506-19395699,19396270-19396355,
           19396364-19396444,19396842-19397023,19397305-19397346,
           19398247-19398558,19399374-19399434,19399435-19399617,
           19399744-19399863,19400380-19401051,19402597-19402668,
           19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 301 IGMIVQGELT*LMMYA-PYYFSLLYTYIQFFKHKFFRGYYYLFIFYCLRG 447
           IG+I   + + L   A PY  SL+   +    H FF  Y+++ + +C+ G
Sbjct: 421 IGLITSSKYSFLQFDADPYMLSLIQVILSNHTHLFFFAYWFISV-HCVAG 469


>01_07_0098 -
           41071997-41072248,41072387-41072519,41072694-41072886,
           41072975-41073049,41073140-41073266,41073613-41073833,
           41073957-41074110
          Length = 384

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 148 SSFSPPYLTKWGRHS*FFSSILYQPSSQHSLLFLSY 41
           SS +PP L +WGR     S+  YQ + Q SL  L++
Sbjct: 44  SSETPPTLVEWGRCGRTLSAPEYQGARQFSLEELAH 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,910,411
Number of Sequences: 37544
Number of extensions: 217175
Number of successful extensions: 442
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)