Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0362
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   7.5  
U27312-14|AAA68257.2|  276|Caenorhabditis elegans Hypothetical p...    27   9.9  

>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -1

Query: 312 NHSDVFWKFTYNNVYN---NKISHTEIAYDAIVNLLVKGPLRSQKIEV 178
           NHS +    ++N+ Y       ++T  ++DA  NLL KGPL   K +V
Sbjct: 166 NHSSLNESPSHNSSYEMSTTTTANTSNSFDATANLLKKGPLTISKGKV 213


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -1

Query: 363  RKIIRCVHHQLGKLALYNHSDVFWKFTYNNVYNNKISHTEIAYDAIVNLLVKGPLRSQK 187
            +K  R  H  + K+ L +H       T     N  + +  ++YD +  +   GP R QK
Sbjct: 3111 QKDFRLFHSAVAKVNLLHHRATRMLQTQGQYQNQTVINYTLSYDPVSAIHETGPKRFQK 3169


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -1

Query: 363  RKIIRCVHHQLGKLALYNHSDVFWKFTYNNVYNNKISHTEIAYDAIVNLLVKGPLRSQK 187
            +K  R  H  + K+ L +H       T     N  + +  ++YD +  +   GP R QK
Sbjct: 3111 QKDFRLFHSAVAKVNLLHHRATRMLQTQGQYQNQTVINYTLSYDPVSAIHETGPKRFQK 3169


>U27312-14|AAA68257.2|  276|Caenorhabditis elegans Hypothetical
           protein F26A1.1 protein.
          Length = 276

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -1

Query: 363 RKIIRC-VHHQLGKLALYNHSDVFWK--FTYNNVYNNKISHTEIAYDAIVNL 217
           R+II C V  Q  KL + N S    +  + YN ++   ++  EI  D ++NL
Sbjct: 190 RRIIVCSVSIQKPKLVIDNKSFKHGEDVYAYNRIFGEMLAKLEIVTDKMINL 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,813,170
Number of Sequences: 27780
Number of extensions: 211726
Number of successful extensions: 512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)