Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0358
         (514 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.1  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   4.9  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   6.4  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 151 ILFHVFSREKLYRPCPNMIFKEIHTKSH*RFAKM 50
           +L HV+   KL+  CP  I ++I  +    F K+
Sbjct: 9   VLKHVWFLSKLFLLCPRSIDEKIKRQERHSFYKI 42


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +3

Query: 303 PPXXXXXXXXTSPQRRPALAAPCQGPLT 386
           PP         SP RR A + PC    T
Sbjct: 171 PPDWEGTTLSQSPNRRRASSNPCHNGAT 198


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 342 QRRPALAAPCQGPLTPPHHIHL 407
           Q+  +   P QGPLTP  + H+
Sbjct: 176 QKTKSSNRPHQGPLTPILYDHI 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,922
Number of Sequences: 336
Number of extensions: 2582
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)