Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0358
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.31 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   5.0  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.7  
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    25   6.7  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   8.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 294 THSPPXXXXXXXXTSPQRRPALAAPCQGPLTPP 392
           T +PP          P+R P+L+AP   P+ PP
Sbjct: 227 TSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPP 259


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 477 SGLAVSSVVGAWSWGPTSAS 418
           SGL  SS V AW+W  T  S
Sbjct: 54  SGLISSSTVSAWTWPATLLS 73


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 477 SGLAVSSVVGAWSWGPT 427
           +GL  S+VV +W+W  T
Sbjct: 55  TGLVASAVVSSWTWAST 71


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 1   RKSVIGRFLSIPTLFVSFLRNASG 72
           +K  +   ++  TLFVSFL +ASG
Sbjct: 37  QKEALKAMINSATLFVSFLTSASG 60


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 438 WGPTSASPQVSGECGEV 388
           W     +PQV+G CGE+
Sbjct: 355 WKSFDLNPQVAGACGEI 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,744
Number of Sequences: 5004
Number of extensions: 41100
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)