Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0358
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0408 + 22655454-22655520,22656055-22656356 33 0.13
06_01_0170 - 1352865-1353422,1355049-1355327 32 0.24
01_05_0175 - 18936752-18937621,18938855-18941641 32 0.24
07_03_1021 - 23347426-23347619,23348040-23348145,23348257-23348268 31 0.72
09_02_0543 + 10427321-10428315,10428440-10429154 29 1.7
06_03_1105 - 27634787-27636025 29 1.7
02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608 29 1.7
11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584 29 2.2
04_03_1022 - 21778315-21779007 28 3.8
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 28 5.1
11_02_0076 - 8059267-8059387,8059406-8059857 28 5.1
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 28 5.1
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 27 6.7
01_03_0025 + 11739930-11740493,11740820-11741020,11741143-117412... 27 6.7
01_02_0122 + 11348686-11348948,11350492-11350587,11351513-113515... 27 6.7
05_04_0035 + 17378541-17381276 27 8.8
>02_04_0408 + 22655454-22655520,22656055-22656356
Length = 122
Score = 33.1 bits (72), Expect = 0.13
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +1
Query: 145 TKSLIVGQFFLCQVQLNYQDSAVN*KPTQWVAYFGSTGESGACGSAGRNGRTA---RP-R 312
+K L+V L A N +PT A GS G++G +AG NG++A P
Sbjct: 3 SKGLVVFALLLLAAAFLATSEAANSQPTYPPANGGSDGQAGGSSAAGGNGKSAGYVAPYY 62
Query: 313 PSPRCWRRALNVDPP 357
P P W PP
Sbjct: 63 PGPWWWPNGGGFYPP 77
>06_01_0170 - 1352865-1353422,1355049-1355327
Length = 278
Score = 32.3 bits (70), Expect = 0.24
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRPSPR 324
GST G GSAGR+GR PR +PR
Sbjct: 202 GSTIVGGVDGSAGRSGRRGPPRAAPR 227
>01_05_0175 - 18936752-18937621,18938855-18941641
Length = 1218
Score = 32.3 bits (70), Expect = 0.24
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 243 FWEHG*VRRVWQCRAERTHSPP-XXXXXXXXTSPQRRPALAAPCQGPLTPPH 395
F EH V VW+CR + + +PP T+P A AAP + PPH
Sbjct: 49 FLEHE-VGLVWRCRVKTSWTPPDSYPDFALPTAPASASAAAAPPRYDRVPPH 99
>07_03_1021 - 23347426-23347619,23348040-23348145,23348257-23348268
Length = 103
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 202 DSAVN*KPTQWVAYFGSTGESG--ACGSAGRNGRTARPRPSPR 324
+SA PT+ + FG SG + + G +G TARPRPS R
Sbjct: 46 ESAGETAPTRALLRFGPKRLSGHRSAAACGPSGHTARPRPSTR 88
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 371 PGPADATSPHSPDTCGLALVGPQDQAP 451
PGPA A SPHSP V P P
Sbjct: 70 PGPAAAPSPHSPSPSNAPWVAPAADIP 96
>06_03_1105 - 27634787-27636025
Length = 412
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 202 DSAVN*KPTQWVAYFGSTGESGACGSAGRNGRT-ARPRPSPRCWRRALNVDPP 357
DSA + P + S S + S+ R GR+ AR RPSP R L+VD P
Sbjct: 258 DSAADPNPPRIRLVRSSHRHSTSSSSSSRAGRSPARRRPSPPPPPRCLSVDSP 310
>02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608
Length = 375
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = -2
Query: 483 QLSGLAVSSVVGAWSWGPTSASPQVSGECGEVASAGPGTAQPGRVYV 343
+ +G A + AW+WGP G C A P A +Y+
Sbjct: 185 RFAGSAEAFDPAAWAWGPVQERVLDEGTCPRTCCAAPAPAAGATMYM 231
>11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584
Length = 607
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 510 SLCRFLVTFQLSGLAVSSVVGAWSWGPTSA 421
S C LV F++ G ++ + AW WG SA
Sbjct: 492 SACHHLVIFRVHGNTLTGNLPAWVWGQQSA 521
>04_03_1022 - 21778315-21779007
Length = 230
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 339 PQRRPALAAPCQGPLTPPHHIH 404
P PA AP GP PPHH H
Sbjct: 71 PPHTPA-PAPAPGPYIPPHHPH 91
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 313 AAGGLCVRSARHCHTRRTHPCSQNKPP 233
A G SAR+C RR HP + +PP
Sbjct: 78 AEGAATAGSARNCRRRRHHPRIRLRPP 104
>11_02_0076 - 8059267-8059387,8059406-8059857
Length = 190
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 241 YFGSTGESGACGSAGRNGRTARPRPSPRCWR 333
+FGST + GA SAG T S WR
Sbjct: 105 FFGSTAQRGAVASAGARSPTRHGSSSSPRWR 135
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 335 EPST*TRPGCAVPGPADATSPHSPDTCGLALVGPQDQA 448
E ST T VP P+DAT+P+ + G A P+ A
Sbjct: 307 ERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDA 344
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 250 STGESGACGSAGRNGRTARPRPSPR 324
S+ G G + RTARP P+PR
Sbjct: 32 SSSSGGGGGGSSSGARTARPPPAPR 56
>01_03_0025 +
11739930-11740493,11740820-11741020,11741143-11741235,
11741355-11742125
Length = 542
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 223 PTQWVAYFGSTGESGACGSAGRNGRTARPRPSPRCWRR 336
P+Q V++ G +G S RN R P R WRR
Sbjct: 57 PSQRVSWRGDSGLSDGSSIKARNSPLLRVSPFRRHWRR 94
>01_02_0122 +
11348686-11348948,11350492-11350587,11351513-11351524,
11354009-11354699
Length = 353
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 223 PTQWVAYFGSTGESGACGSAGRNGRT 300
P V GS+ ESG CG +G +G T
Sbjct: 268 PKPEVGQDGSSAESGCCGPSGSSGPT 293
>05_04_0035 + 17378541-17381276
Length = 911
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 353 RPGCAVPGPADATSPHSPDTCGLALVGPQ 439
R A P P D +P PDT ALVGP+
Sbjct: 86 RDPSAPPPPRDPNAPRLPDTTS-ALVGPR 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,620,760
Number of Sequences: 37544
Number of extensions: 343862
Number of successful extensions: 1223
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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