Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0358
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6)                32   0.32 
SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)                 29   3.0  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25)           27   6.9  
SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_6094| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  

>SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6)
          Length = 433

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 259 ESGACGSAGRNGRTARPRPSPRCWRRALNVDP 354
           E G C +A R GR+   +P  R +RR  N DP
Sbjct: 179 EDGTCHNAWRVGRSEEKKPVLRVYRRQTNCDP 210


>SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)
          Length = 1122

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 304 RPRPSPRCWRRALNVDPPW 360
           RP P PR WRR LN D  W
Sbjct: 238 RPTPPPRNWRRVLN-DDQW 255


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
 Frame = +2

Query: 194 TTKIPPSTESLPSGWLILGARVSPARVAVPGGTDAQXXXXXXXXXXDEPST*TRPGC-AV 370
           +T   PST S PS  +  G   +P+  + P GT               PST + P   + 
Sbjct: 148 STPSTPSTPSTPSTPITPGTPSTPSTPSAP-GTPITPSTLSTPSTPSTPSTRSTPSTPST 206

Query: 371 PG-PADATSPHSPDTCGLALVGPQDQAPTTLDT 466
           P  P+  + P +P              P+TL T
Sbjct: 207 PSTPSTLSMPSTPSMPNTPSTPSTPSTPSTLST 239



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
 Frame = +2

Query: 197 TKIPPSTESLPSGWLILGARVSPARVAVPGGTDAQXXXXXXXXXXDEPST*TRPGC-AVP 373
           T   PST S PS  +  G   +P+  + P GT               PST + P   + P
Sbjct: 699 TPSTPSTPSTPSTPITPGTPSTPSTPSAP-GTPITPSTLSTPSTPSTPSTRSTPSTPSTP 757

Query: 374 G-PADATSPHSPDTCGLALVGPQDQAPTTLDT 466
             P+  + P +P              P+TL T
Sbjct: 758 STPSTLSMPSTPSMPNTPSTPSTPSTPSTLST 789


>SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25)
          Length = 357

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 386 ATSPHSPDTCGLALVGPQDQAPTTLDTANPDS*NVTRKRHSDR 514
           +TS   P+TC ++ +G      T L T N    +V    HSDR
Sbjct: 262 STSKRLPNTCNVSFIGDGLHGRTILKTVNHLLASVGAACHSDR 304


>SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/48 (33%), Positives = 17/48 (35%)
 Frame = +2

Query: 338 PST*TRPGCAVPGPADATSPHSPDTCGLALVGPQDQAPTTLDTANPDS 481
           P    RP    PGPA         T  L    P    P TL  +NP S
Sbjct: 410 PQIAPRPAVIAPGPAPPRLIAPSTTATLVKKEPMPGTPRTLIVSNPSS 457


>SB_6094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +1

Query: 232 WVAYFGSTGESGACGSAGRNGRTARPRPSPRCWRRALNVD 351
           W A   S   + +  S     R +RPRP PR   RA   D
Sbjct: 33  WPAAHNSNDSTVSDSSEDYTPRVSRPRPQPRARARAAPAD 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,183,543
Number of Sequences: 59808
Number of extensions: 371470
Number of successful extensions: 930
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)