Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0358
(514 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ079590-1|AAZ30918.1| 858|Homo sapiens ZXD-like zinc finger pr... 36 0.083
AY936556-1|AAX23974.1| 858|Homo sapiens ZXD family zinc finger ... 36 0.083
DQ139275-1|ABA43896.1| 1313|Homo sapiens Tax1-binding protein 2 ... 34 0.25
BX284668-3|CAH70057.1| 1898|Homo sapiens ciliary rootlet coiled-... 34 0.25
BX284668-2|CAH70055.1| 2017|Homo sapiens ciliary rootlet coiled-... 34 0.25
AL049569-4|CAI20365.1| 1898|Homo sapiens ciliary rootlet coiled-... 34 0.25
AL049569-3|CAI20363.1| 2017|Homo sapiens ciliary rootlet coiled-... 34 0.25
AB007914-1|BAA32290.2| 1919|Homo sapiens KIAA0445 protein protein. 34 0.25
AK098372-1|BAC05294.1| 243|Homo sapiens protein ( Homo sapiens ... 33 0.77
U82483-1|AAC13661.1| 382|Homo sapiens vascular addressin MAdCAM... 31 3.1
X17406-1|CAA35463.1| 600|Homo sapiens cartilage specific proteo... 30 5.5
M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartila... 30 5.5
J05062-1|AAA35726.1| 480|Homo sapiens protein ( Human cartilage... 30 5.5
AC007785-1|AAD38244.1| 477|Homo sapiens BC282485_1 protein. 30 5.5
L04762-1|AAA59429.1| 123|Homo sapiens immunoglobulin mu chain p... 29 9.5
AL731557-2|CAI14825.1| 334|Homo sapiens ventral anterior homeob... 29 9.5
>DQ079590-1|AAZ30918.1| 858|Homo sapiens ZXD-like zinc finger
protein protein.
Length = 858
Score = 35.9 bits (79), Expect = 0.083
Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Frame = -2
Query: 498 FLVTFQLS-GLAVSSVVGAWSWGPTS----ASPQVSGECGEVASAGPGTAQPGRVYVEXX 334
FLV ++ G A + G+ P S AS G G A+ GPG A G V +
Sbjct: 75 FLVLLEVPHGGAAAEAAGSQEAEPGSRVNLASRPEQGPSGPAAAPGPGVAPAGAVTISSQ 134
Query: 333 XXXXXXXXXXGCASVPPGTAT--RAGLTRAPKISHP 232
S PPG AT A RAP+ S P
Sbjct: 135 DLLVRLDRGVLALSAPPGPATAGAAAPRRAPQASGP 170
>AY936556-1|AAX23974.1| 858|Homo sapiens ZXD family zinc finger C
protein.
Length = 858
Score = 35.9 bits (79), Expect = 0.083
Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Frame = -2
Query: 498 FLVTFQLS-GLAVSSVVGAWSWGPTS----ASPQVSGECGEVASAGPGTAQPGRVYVEXX 334
FLV ++ G A + G+ P S AS G G A+ GPG A G V +
Sbjct: 75 FLVLLEVPHGGAAAEAAGSQEAEPGSRVNLASRPEQGPSGPAAAPGPGVAPAGAVTISSQ 134
Query: 333 XXXXXXXXXXGCASVPPGTAT--RAGLTRAPKISHP 232
S PPG AT A RAP+ S P
Sbjct: 135 DLLVRLDRGVLALSAPPGPATAGAAAPRRAPQASGP 170
>DQ139275-1|ABA43896.1| 1313|Homo sapiens Tax1-binding protein 2
protein.
Length = 1313
Score = 34.3 bits (75), Expect = 0.25
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 245 LGARVSPARVAVPGGTDAQXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 409
LG SPA VPG + PST PG P P ATSP SPD
Sbjct: 749 LGRAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 804
>BX284668-3|CAH70057.1| 1898|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 1898
Score = 34.3 bits (75), Expect = 0.25
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 245 LGARVSPARVAVPGGTDAQXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 409
LG SPA VPG + PST PG P P ATSP SPD
Sbjct: 1327 LGRAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1382
>BX284668-2|CAH70055.1| 2017|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 2017
Score = 34.3 bits (75), Expect = 0.25
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 245 LGARVSPARVAVPGGTDAQXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 409
LG SPA VPG + PST PG P P ATSP SPD
Sbjct: 1446 LGRAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1501
>AL049569-4|CAI20365.1| 1898|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 1898
Score = 34.3 bits (75), Expect = 0.25
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 245 LGARVSPARVAVPGGTDAQXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 409
LG SPA VPG + PST PG P P ATSP SPD
Sbjct: 1327 LGRAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1382
>AL049569-3|CAI20363.1| 2017|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 2017
Score = 34.3 bits (75), Expect = 0.25
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 245 LGARVSPARVAVPGGTDAQXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 409
LG SPA VPG + PST PG P P ATSP SPD
Sbjct: 1446 LGRAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1501
>AB007914-1|BAA32290.2| 1919|Homo sapiens KIAA0445 protein protein.
Length = 1919
Score = 34.3 bits (75), Expect = 0.25
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 245 LGARVSPARVAVPGGTDAQXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPD 409
LG SPA VPG + PST PG P P ATSP SPD
Sbjct: 1348 LGRAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1403
>AK098372-1|BAC05294.1| 243|Homo sapiens protein ( Homo sapiens
cDNA FLJ25506 fis, clone CBR05185. ).
Length = 243
Score = 32.7 bits (71), Expect = 0.77
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = +1
Query: 232 WVAYFGSTGESGACGSAGRNGRTARPRP--SPRCWRRALNVDPP 357
W+ G G G G G + ARP P RCWR PP
Sbjct: 2 WICPGGGGGGGGGGGGGGGDREDARPAPLCCGRCWRSGCAARPP 45
>U82483-1|AAC13661.1| 382|Homo sapiens vascular addressin MAdCAM-1
protein.
Length = 382
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 371 PGPADATSPHSPDTCGLALVGPQDQAPTTLDTANPD 478
P P D TSP SPDT + P +P DT +P+
Sbjct: 230 PEPPDTTSPESPDT--TSPESPDTTSPEPPDTTSPE 263
>X17406-1|CAA35463.1| 600|Homo sapiens cartilage specific
proteoglycan (600 AA) protein.
Length = 600
Score = 29.9 bits (64), Expect = 5.5
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 477 SGLAVSSVVGAWSWGPTSASPQVSGECGEVASAGPGTAQPG 355
SGL VS + G SA+P+VSGE ++ GT PG
Sbjct: 253 SGLGVSGSTLTFQEGEASAAPEVSGE--STTTSDVGTEAPG 291
>M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartilage
proteoglycan core protein protein.
Length = 2316
Score = 29.9 bits (64), Expect = 5.5
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 477 SGLAVSSVVGAWSWGPTSASPQVSGECGEVASAGPGTAQPG 355
SGL VS + G SA+P+VSGE ++ GT PG
Sbjct: 2030 SGLGVSGSTLTFQEGEASAAPEVSGE--STTTSDVGTEAPG 2068
>J05062-1|AAA35726.1| 480|Homo sapiens protein ( Human
cartilage-specific proteoglycan core protein (CSPCP)
mRNA, 3' end. ).
Length = 480
Score = 29.9 bits (64), Expect = 5.5
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 477 SGLAVSSVVGAWSWGPTSASPQVSGECGEVASAGPGTAQPG 355
SGL VS + G SA+P+VSGE ++ GT PG
Sbjct: 95 SGLGVSGSTLTFQEGEASAAPEVSGE--STTTSDVGTEAPG 133
>AC007785-1|AAD38244.1| 477|Homo sapiens BC282485_1 protein.
Length = 477
Score = 29.9 bits (64), Expect = 5.5
Identities = 18/30 (60%), Positives = 18/30 (60%)
Frame = +1
Query: 265 GACGSAGRNGRTARPRPSPRCWRRALNVDP 354
G GS GR GR ARP PSP RAL DP
Sbjct: 285 GGRGSRGR-GRPARPSPSP-TGGRALRFDP 312
>L04762-1|AAA59429.1| 123|Homo sapiens immunoglobulin mu chain
protein.
Length = 123
Score = 29.1 bits (62), Expect = 9.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 495 LVTFQLSGLAVSSVVGAWSW 436
L+T +SG VSS +GAWSW
Sbjct: 11 LLTCVISGDTVSSNIGAWSW 30
>AL731557-2|CAI14825.1| 334|Homo sapiens ventral anterior homeobox
1 protein.
Length = 334
Score = 29.1 bits (62), Expect = 9.5
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 365 AVPGPADATSPHSPDTCGLALVGP 436
A PGPA A SPH P G GP
Sbjct: 232 AAPGPAGAASPHPPAVGGAPGPGP 255
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,907,101
Number of Sequences: 237096
Number of extensions: 1922716
Number of successful extensions: 6794
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6749
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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