Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0358
(514 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical pr... 31 0.64
AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen pro... 30 1.1
Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical pr... 29 1.5
L15313-7|AAA28197.1| 250|Caenorhabditis elegans Hypothetical pr... 29 1.5
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 29 2.0
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 29 2.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 2.6
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 29 2.6
AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical... 28 3.4
AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical... 28 3.4
AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative seri... 28 3.4
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 28 3.4
U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helica... 28 4.5
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 28 4.5
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 28 4.5
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 28 4.5
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 27 6.0
AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical ... 27 6.0
Z68005-4|CAA91992.2| 430|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z48585-8|CAA88484.1| 142|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z11505-10|CAA77588.2| 590|Caenorhabditis elegans Hypothetical p... 27 7.9
AC199158-8|ABO33283.1| 439|Caenorhabditis elegans Hypothetical ... 27 7.9
AC199158-4|ABO33286.1| 439|Caenorhabditis elegans Hypothetical ... 27 7.9
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 27 7.9
>Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical
protein K08C9.4 protein.
Length = 301
Score = 30.7 bits (66), Expect = 0.64
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRPSPR 324
G GE+GA G AG+NG+ + P P+
Sbjct: 185 GQDGEAGAPGPAGKNGQRGQGAPGPQ 210
>AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen
protein 71 protein.
Length = 371
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRPSPR 324
G GE GA G G N + P P P+
Sbjct: 265 GKIGEPGATGETGENAENSEPTPGPQ 290
>Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical
protein T02D1.6 protein.
Length = 433
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 507 LCRFLVTFQLSGLAVSSVVGAWSWGPTSAS-PQVSGECGEVASAGPGTAQPGRVYV 343
+C F+++ L + SV+G W +G T V G G +AS TA YV
Sbjct: 112 VCDFVMSLSLPPAILDSVIGFWIFGTTMCKVHHVFGSVGRIASTFLITAMSFDRYV 167
>L15313-7|AAA28197.1| 250|Caenorhabditis elegans Hypothetical
protein ZK353.7 protein.
Length = 250
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Frame = +1
Query: 193 NYQDSAVN*KPTQWVAYFGSTG-ESGACGSAGRNGRTA------RPRPSPRCWRRALNVD 351
N + A N + +W+ G+TG GA SAG RT+ RP P + RA++V
Sbjct: 77 NEDEMAANMEDVEWLKKAGATGFVFGALTSAGSLDRTSCQSIIETARPHPVTFHRAIDVA 136
Query: 352 PPW 360
W
Sbjct: 137 YDW 139
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +2
Query: 254 RVSPARVAVPGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPADATSPHSPDT 412
+V+PA A P DA P+ P C PA A +P + D+
Sbjct: 296 QVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAPAAAPAATDS 348
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRPS-PR 324
G GE G G AGR G RP P+ PR
Sbjct: 177 GGPGEQGPQGDAGRPGAAGRPGPAGPR 203
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRP 315
G+ G G G AG+NG RP P
Sbjct: 231 GNPGAPGNDGEAGKNGNAGRPGP 253
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 282 RAERTHSPPXXXXXXXXTSPQRRPALAAPCQGPLTPP 392
R SPP SPQRRP P P PP
Sbjct: 148 RTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPP 184
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRPS-PR 324
G GE G G AGR G RP P+ PR
Sbjct: 171 GGPGEQGPQGDAGRPGAAGRPGPAGPR 197
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRP 315
G+ G G G AG+NG RP P
Sbjct: 225 GNPGAPGNDGEAGKNGNAGRPGP 247
>AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +2
Query: 281 PGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 445
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 446 APTTLDTANP 475
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +2
Query: 281 PGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 445
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 446 APTTLDTANP 475
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative
serine-threonine kinasePAR-4 protein.
Length = 617
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +2
Query: 281 PGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 445
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 446 APTTLDTANP 475
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 28.3 bits (60), Expect = 3.4
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 11/116 (9%)
Frame = +2
Query: 197 TKIPPSTESLPSGW---------LILGARVS--PARVAVPGGTDAQXXXXXXXXXXDEPS 343
T+ PP+T++ P+ W ++ G RV+ P + P T P
Sbjct: 335 TEAPPTTQTTPTSWTRPTDGRVHVMPGIRVTETPPTIQTPPPTTQTPPTTQTSSTTQTPR 394
Query: 344 T*TRPGCAVPGPADATSPHSPDTCGLALVGPQDQAPTTLDTANPDS*NVTRKRHSD 511
T P P T P T + P + PT++ T P+S + H++
Sbjct: 395 TKQTWAPWTP-PTTTTRQTPPTTQAPPITPPPYRPPTSVVTYGPESEEIQHAEHAE 449
>U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform b
protein.
Length = 265
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRPSP 321
G+ G+ G G+ G+NGR A P+P
Sbjct: 154 GNDGKDGRNGNDGKNGRDAEVLPAP 178
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRPSP 321
G+ G+ G G+ G+NGR A P+P
Sbjct: 154 GNDGKDGRNGNDGKNGRDAEVLPAP 178
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRPSP 321
G+ G+ G G+ G+NGR A P+P
Sbjct: 154 GNDGKDGRNGNDGKNGRDAEVLPAP 178
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRPSP 321
G GE+GA G G+NG+ P P
Sbjct: 182 GQDGEAGAPGGPGKNGQRGSGAPGP 206
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARP 309
G G SG CG GR G RP
Sbjct: 153 GPPGPSGTCGQVGRPGPDGRP 173
>AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical
protein Y11D7A.11 protein.
Length = 313
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARP 309
G++G G G GRNGR RP
Sbjct: 184 GNSGRPGMDGMPGRNGRCGRP 204
>Z68005-4|CAA91992.2| 430|Caenorhabditis elegans Hypothetical
protein F59F3.2 protein.
Length = 430
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRP 315
GS G GA G G NG+ A P P
Sbjct: 233 GSVGLPGARGDPGNNGKPAPPGP 255
>Z48585-8|CAA88484.1| 142|Caenorhabditis elegans Hypothetical
protein ZK673.10 protein.
Length = 142
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 181 QVQLNYQDSAVN*KPTQWVAYFGSTG-ESGACGSAGRNGRTARPRPSP 321
Q + Y ++ N + A F TG +SG C A G++A P+P
Sbjct: 50 QEEYRYYENLANQEQFSDDACFSDTGMDSGFCSGATSTGQSASTSPAP 97
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical protein
ZC84.6 protein.
Length = 1474
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 223 PTQWVAYFGSTGESGACGSAG 285
P Q VA+ G TGE+ AC G
Sbjct: 1036 PVQMVAFIGITGEAQACSMNG 1056
>Z11505-10|CAA77588.2| 590|Caenorhabditis elegans Hypothetical
protein F59B2.11 protein.
Length = 590
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRP 315
G+T + + G GR GR RPRP
Sbjct: 105 GNTRKESSGGRGGRGGRGRRPRP 127
>AC199158-8|ABO33283.1| 439|Caenorhabditis elegans Hypothetical
protein AC8.10 protein.
Length = 439
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 319 ARAAGGLCVRSARHCHTRRTHPCSQN 242
A+A CVR RH T +H C QN
Sbjct: 361 AKAVDSPCVRCDRHILTLISHNCGQN 386
>AC199158-4|ABO33286.1| 439|Caenorhabditis elegans Hypothetical
protein AC8.3 protein.
Length = 439
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 319 ARAAGGLCVRSARHCHTRRTHPCSQN 242
A+A CVR RH T +H C QN
Sbjct: 361 AKAVDSPCVRCDRHILTLISHNCGQN 386
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 247 GSTGESGACGSAGRNGRTARPRPS 318
G++G+SGA G+ G G RP S
Sbjct: 179 GASGDSGAPGNDGEKGEPGRPAQS 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,354,832
Number of Sequences: 27780
Number of extensions: 267811
Number of successful extensions: 733
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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