Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0358
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22560.1 68418.m02635 hypothetical protein contains Pfam prof...    29   1.8  
At5g40540.1 68418.m04920 protein kinase, putative similar to pro...    29   2.4  
At5g51550.1 68418.m06392 phosphate-responsive 1 family protein s...    28   3.2  
At3g27040.1 68416.m03383 meprin and TRAF homology domain-contain...    28   4.2  
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote...    27   5.6  
At1g19690.1 68414.m02455 expressed protein similar to (SP:P76370...    27   5.6  
At3g61800.1 68416.m06935 expressed protein                             27   7.4  
At5g55340.1 68418.m06896 long-chain-alcohol O-fatty-acyltransfer...    27   9.8  
At4g09780.1 68417.m01607 meprin and TRAF homology domain-contain...    27   9.8  

>At5g22560.1 68418.m02635 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 517

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +3

Query: 273 WQCRAERTHSPPXXXXXXXXTSPQRRPALAAPCQGPLTPPHHIHLTLV 416
           W+ + +R  S P          P   P L  P   PLTPP    L LV
Sbjct: 288 WKNKVQRETSTPPPIETKTPPLPPPPPTLTQPHPKPLTPPPRRFLKLV 335


>At5g40540.1 68418.m04920 protein kinase, putative similar to
           protein kinase ATN1 [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387
          Length = 353

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 395 PHSPDTCGLALVGPQDQAPTTLDTA 469
           P SP TC L  V  +DQ PT  ++A
Sbjct: 316 PESPGTCSLMTVRDKDQIPTDANSA 340


>At5g51550.1 68418.m06392 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 337

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 495 LVTFQLSGLAVSSVVGAWSWGPTSASP-QVSGECGEVASAGPGTAQPGRV 349
           ++  +++ LA + +V AW  GP   +P +++  C  +   G G +  G++
Sbjct: 250 VIAHEIAELATNPLVNAWYAGPDPVAPVEIADLCEGIYGTGGGGSYTGQM 299


>At3g27040.1 68416.m03383 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 358

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 209 PSTESLPSGWLILGARVSPARV-AVPGGTDAQ 301
           P++ESLPSGW    A+VS   V  +PGG   Q
Sbjct: 146 PNSESLPSGWR-RRAKVSFTMVNQIPGGLSQQ 176


>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase (RKL1),
           Arabidopsis thaliana, EMBL:AF084034
          Length = 660

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 203 IPPSTESLPSGWLILGARVSPARVAVPG 286
           +PP  + + +GWL+LG  +  A + V G
Sbjct: 280 VPPVVKKVKNGWLVLGFTIGLASLIVLG 307


>At1g19690.1 68414.m02455 expressed protein similar to (SP:P76370)
           Protein yeeZ precursor. {Escherichia coli O157:H7}
          Length = 352

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 229 QWVAYFGSTGESGACGSAGRNGRTARPRPSPRCWRRALNVDPPWL 363
           +W+ Y  ST   G CG A  N     P P  +  +  L  +  WL
Sbjct: 151 RWLCYLSSTSVYGDCGGAWVN-ENHLPNPKTQSAKVRLAAEQGWL 194


>At3g61800.1 68416.m06935 expressed protein 
          Length = 664

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 282 RAERTHSPPXXXXXXXXTSPQRRPALAAPCQGPLTP 389
           R ERT +PP           QRR     P  GP+ P
Sbjct: 467 REERTETPPCRASLKKGGLCQRRDLRVCPFHGPIVP 502


>At5g55340.1 68418.m06896 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein contains
           similarity to wax synthase similarity to wax synthase
           wax synthase - Simmondsia chinensis, PID:g5020219
           similar to wax synthase [gi:5020219] from Simmondsia
           chinensis
          Length = 333

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -2

Query: 150 FCFTCFPVK 124
           FCFTCFP+K
Sbjct: 95  FCFTCFPIK 103


>At4g09780.1 68417.m01607 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 443

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 211 RRNLGSLVALGTKKTDPRLMILFHVFSREK 122
           ++N   +   GT +T   L ++FH FSREK
Sbjct: 303 QKNTNHIEKRGTYQTSFFLYLVFHFFSREK 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,738,999
Number of Sequences: 28952
Number of extensions: 242905
Number of successful extensions: 599
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)