Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0357
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 221 5e-58
SB_56| Best HMM Match : Actin (HMM E-Value=0) 221 5e-58
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 221 5e-58
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 220 1e-57
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 201 5e-52
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 5e-25
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 4e-21
SB_54| Best HMM Match : Actin (HMM E-Value=0) 96 3e-20
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 84 1e-16
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 69 3e-12
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 55 5e-08
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 53 2e-07
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 7e-07
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.069
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.091
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.64
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92) 29 3.4
SB_32601| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 28 7.9
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 221 bits (539), Expect = 5e-58
Identities = 105/133 (78%), Positives = 106/133 (79%)
Frame = +2
Query: 254 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 433
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 434 APLNPKANREKMTQIMFETFNTPAMTCHPSXXXXXXXXXXXXXXXXDSRDSVFHTVPIYE 613
APLNPKANREKMTQIMFETFN+PAM DS D V HTVPIYE
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYE 167
Query: 614 GYALPHAILAFGL 652
GYALPHAIL L
Sbjct: 168 GYALPHAILRLDL 180
Score = 97.5 bits (232), Expect = 9e-21
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = +3
Query: 117 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 263
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 221 bits (539), Expect = 5e-58
Identities = 105/133 (78%), Positives = 106/133 (79%)
Frame = +2
Query: 254 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 433
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 434 APLNPKANREKMTQIMFETFNTPAMTCHPSXXXXXXXXXXXXXXXXDSRDSVFHTVPIYE 613
APLNPKANREKMTQIMFETFN+PAM DS D V HTVPIYE
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYE 167
Query: 614 GYALPHAILAFGL 652
GYALPHAIL L
Sbjct: 168 GYALPHAILRLDL 180
Score = 98.7 bits (235), Expect = 4e-21
Identities = 44/49 (89%), Positives = 48/49 (97%)
Frame = +3
Query: 117 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 263
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 221 bits (539), Expect = 5e-58
Identities = 105/133 (78%), Positives = 106/133 (79%)
Frame = +2
Query: 254 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 433
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 434 APLNPKANREKMTQIMFETFNTPAMTCHPSXXXXXXXXXXXXXXXXDSRDSVFHTVPIYE 613
APLNPKANREKMTQIMFETFN+PAM DS D V HTVPIYE
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYE 168
Query: 614 GYALPHAILAFGL 652
GYALPHAIL L
Sbjct: 169 GYALPHAILRLDL 181
Score = 104 bits (250), Expect = 6e-23
Identities = 46/51 (90%), Positives = 50/51 (98%)
Frame = +3
Query: 111 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 263
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 220 bits (537), Expect = 1e-57
Identities = 104/133 (78%), Positives = 106/133 (79%)
Frame = +2
Query: 254 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 433
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 434 APLNPKANREKMTQIMFETFNTPAMTCHPSXXXXXXXXXXXXXXXXDSRDSVFHTVPIYE 613
APLNPKANREKMTQIMFETFN+PAM DS D V HTVPIYE
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYE 168
Query: 614 GYALPHAILAFGL 652
GYALPHAI+ L
Sbjct: 169 GYALPHAIIRLDL 181
Score = 100 bits (239), Expect = 1e-21
Identities = 45/51 (88%), Positives = 49/51 (96%)
Frame = +3
Query: 111 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 263
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 201 bits (490), Expect = 5e-52
Identities = 97/125 (77%), Positives = 99/125 (79%), Gaps = 2/125 (1%)
Frame = +2
Query: 254 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 433
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 434 APLNPKANREKMTQIMFETFNTPAMTCHPSXXXXXXXXXXXXXXXXDSRDSVFHTVPIYE 613
APLNPKANREKMTQIMFETFN+PAM DS D V HTVPIYE
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYE 168
Query: 614 --GYA 622
GY+
Sbjct: 169 ERGYS 173
Score = 100 bits (239), Expect = 1e-21
Identities = 43/51 (84%), Positives = 49/51 (96%)
Frame = +3
Query: 111 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 263
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 111 bits (267), Expect = 5e-25
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Frame = +2
Query: 260 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEA 436
KD VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE
Sbjct: 53 KDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEP 112
Query: 437 PLNPKANREKMTQIMFETFNTPAMTCHPSXXXXXXXXXXXXXXXXDSRDSVFHTVPIYEG 616
PLNP NREKM ++MFE + + DS D V H P+YEG
Sbjct: 113 PLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEG 172
Query: 617 YALPH 631
+ALPH
Sbjct: 173 FALPH 177
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +3
Query: 129 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 227
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 98.7 bits (235), Expect = 4e-21
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = +3
Query: 117 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 263
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
Score = 89.4 bits (212), Expect = 2e-18
Identities = 40/43 (93%), Positives = 40/43 (93%)
Frame = +2
Query: 254 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 382
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 61.7 bits (143), Expect = 5e-10
Identities = 32/66 (48%), Positives = 36/66 (54%)
Frame = +2
Query: 455 NREKMTQIMFETFNTPAMTCHPSXXXXXXXXXXXXXXXXDSRDSVFHTVPIYEGYALPHA 634
N + M +IMFETFN+PAM DS D V HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 635 ILAFGL 652
I+ L
Sbjct: 138 IIRLDL 143
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 95.9 bits (228), Expect = 3e-20
Identities = 46/91 (50%), Positives = 55/91 (60%)
Frame = +2
Query: 362 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMTCHPSXXXXXX 541
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P M
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 542 XXXXXXXXXXDSRDSVFHTVPIYEGYALPHA 634
D D V HTVP+Y+GY LPHA
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHA 2219
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 135 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 236
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/77 (48%), Positives = 48/77 (62%)
Frame = +2
Query: 410 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMTCHPSXXXXXXXXXXXXXXXXDSRDSV 589
+HPVLLTEAPLNP+ NREK ++ FETFN PA+ D+ D V
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 590 FHTVPIYEGYALPHAIL 640
H+VPIYEG+A+PH+I+
Sbjct: 186 SHSVPIYEGFAMPHSIM 202
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 68.9 bits (161), Expect = 3e-12
Identities = 33/107 (30%), Positives = 55/107 (51%)
Frame = +2
Query: 320 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 499
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 500 PAMTCHPSXXXXXXXXXXXXXXXXDSRDSVFHTVPIYEGYALPHAIL 640
PA + DS + VP+++GY L AI+
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIV 109
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 120 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 236
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Frame = +2
Query: 263 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 427
D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 283 DFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/59 (47%), Positives = 30/59 (50%)
Frame = +2
Query: 476 IMFETFNTPAMTCHPSXXXXXXXXXXXXXXXXDSRDSVFHTVPIYEGYALPHAILAFGL 652
IMFE FN+PA+ DS D V H VPIYEGYALPHAIL L
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDL 59
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 105 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 251
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 35.1 bits (77), Expect = 0.052
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +2
Query: 245 GRYGQKDS---YVGDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 406
GR G+ DS VG++ S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 407 EEHPVLLTEAPLNPKANRE 463
HPV++TE NP R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.7 bits (76), Expect = 0.069
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -1
Query: 233 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 117
MA + D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 269 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 391
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 123 EVAALVVDNGSGMCKAGFAGDDAPRAV 203
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 208 GNTARGASSPAKPALHIPEPLSTT 137
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 208 GNTARGASSPAKPALHIPEPLSTT 137
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 208 GNTARGASSPAKPALHIPEPLSTT 137
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = -1
Query: 209 GKHCARSIISCEAGLAHTGAIVYYQRGNFFVAHLELVKLVRCRCD 75
G+HC + I C G GA GN+ E C D
Sbjct: 724 GRHCEKDIDECSLGYCKNGATCTNTPGNYSCQCTEFTNGTNCELD 768
>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
Length = 806
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 439 PQPQGQQREDDPDHVRNIQHARHDV--PSKPCSRCTPSRRTT 558
P+ Q + +D P HVR++ ++ V +KP SR R+TT
Sbjct: 408 PEIQAEMTKDTPQHVRSLDFSKVKVGEEAKPKSRRRGPRKTT 449
>SB_32601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 581 DSVFHTVPIYEGYALPHAILAF 646
DSV+H VP Y+G ++ H + F
Sbjct: 218 DSVYHFVPYYDGKSVQHRVYQF 239
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 208 GNTARGASSPAKPALHIPEPLSTT 137
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 208 GNTARGASSPAKPALHIPEPLSTT 137
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +3
Query: 129 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMD 257
+ +++D GS KAGFA ++A + + S++G H + + +D
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEHAFLSLKVD 524
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,703,553
Number of Sequences: 59808
Number of extensions: 607869
Number of successful extensions: 1753
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1731
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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