Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0355
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    25   0.75 
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    25   0.75 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   2.3  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   3.0  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   3.0  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 589 NILTLFTNIPMICTILQHTINFITHS*YTHLNI 491
           NIL++FT +PMI   +  T  + +   Y   NI
Sbjct: 322 NILSIFTYVPMILYCVYTTATYDSFMIYKTTNI 354


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 589 NILTLFTNIPMICTILQHTINFITHS*YTHLNI 491
           NIL++FT +PMI   +  T  + +   Y   NI
Sbjct: 47  NILSIFTYVPMILYCVYTTATYDSFMIYKTTNI 79


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -1

Query: 572 YQHTNDLYHITAYNKLYNALMIHALKYNRHYITH 471
           Y H N++YH      +Y +        N+ Y+ H
Sbjct: 39  YTHNNEMYHSVKEEPIYESC---RFSINQPYLNH 69


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -1

Query: 572 YQHTNDLYHITAYNKLYNALMIHALKYNRHYITH 471
           Y H N++YH      +Y +        N+ Y+ H
Sbjct: 39  YTHNNEMYHRVKEEPIYESC---RFSINQPYLNH 69


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -1

Query: 572 YQHTNDLYHITAYNKLYNALMIHALKYNRHYITH 471
           Y H N++YH      +Y +        N+ Y+ H
Sbjct: 39  YTHNNEMYHRVKEEPIYESC---RFSINQPYLNH 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,170
Number of Sequences: 336
Number of extensions: 4669
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)