Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0355
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498...    31   0.84 
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    29   3.4  
10_08_0293 - 16561932-16562216,16562928-16562936,16563188-165632...    29   4.5  
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611...    29   4.5  
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086...    28   7.8  
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283...    28   7.8  

>01_06_1252 -
           35748000-35748173,35748243-35748375,35749771-35749847,
           35750465-35750509,35750584-35750679,35751125-35751130,
           35751259-35751388,35751510-35751706
          Length = 285

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -3

Query: 276 DPARVSIARWLPTTAGTK-SSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLT 100
           DP ++ + ++      +K SS  G+ +  +D  I   SG       G   A   G GY+ 
Sbjct: 98  DPLKIYLHKYREMEGDSKLSSKAGDGSVKKDT-IGPHSGASSSSAQGMVGAYTQGMGYMQ 156

Query: 99  PQSN-QVLLFFRTYA 58
           PQSN  +L+  +++A
Sbjct: 157 PQSNFHILVVLQSFA 171


>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 258 WRPSPDPGQVRSCPRCPSLHTG 323
           WR SP    ++ CP C   HTG
Sbjct: 414 WRESPASRAMQKCPACKRTHTG 435


>10_08_0293 -
           16561932-16562216,16562928-16562936,16563188-16563264,
           16563414-16563813
          Length = 256

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 303 IGDSSEPGQDPARVSIARWLPTT---AGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRG 133
           +G+  +PG  P+ +++AR  P T     T++SL     E RD +++      + R  G+ 
Sbjct: 52  VGNLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKS 111

Query: 132 YAT 124
             T
Sbjct: 112 RLT 114


>05_05_0036 -
           21758409-21758531,21758891-21759206,21759964-21761121,
           21761236-21761333
          Length = 564

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 148 VRWPWICHDGWPRLFDASI*SSASLLPHVRSE 53
           VR+ W+C+D   RL D S+ S  S    ++ E
Sbjct: 416 VRFEWVCYDSAKRLLDKSLYSVLSDFAQIQDE 447


>04_04_0326 -
           24407201-24407374,24407397-24407460,24408266-24408689,
           24408885-24409057,24409178-24409275,24409723-24409853,
           24410053-24410174,24411091-24411245,24411976-24412081,
           24412328-24412419,24412499-24412620,24413444-24413544,
           24413636-24413849,24414173-24414311,24415228-24415584
          Length = 823

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 175 LAVWPSRVQVRWPWICHDGWPRLFDASI*SSASLLPHVRSERLDI 41
           LAV PS      PW CH    R+ +A   +S    P  R E   +
Sbjct: 731 LAVTPSMFTDHLPWRCHYAMQRVLEAQTAASCPDSPESRIELFSV 775


>01_01_0359 +
           2829325-2832076,2832223-2832593,2833335-2833695,
           2833799-2833868,2834021-2834108,2834325-2834580,
           2834758-2834883,2835217-2835425
          Length = 1410

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 420 VSVCFYDVRVLRSECEFVCYIVPVIFKCVYHECVIKFIVCCNMVQIIGMLVKSV 581
           V+V  +D++ L S   F      +  + V H C+IK I CC+ +   G   K++
Sbjct: 757 VAVKVFDLQQLGSSKSFEAECEAL--RRVRHRCLIKIITCCSSIDPQGQEFKAL 808


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,222,816
Number of Sequences: 37544
Number of extensions: 479384
Number of successful extensions: 1425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)