Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0355
(671 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 39 0.004
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 36 0.030
SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 35 0.052
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 33 0.21
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 33 0.28
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) 31 0.64
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11) 31 0.84
SB_34736| Best HMM Match : WCCH (HMM E-Value=6.7) 31 1.1
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 31 1.1
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_57004| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 29 3.4
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 29 3.4
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10) 29 3.4
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) 29 4.5
SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69) 28 6.0
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24) 28 7.9
>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 38.7 bits (86), Expect = 0.004
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = -2
Query: 589 NILTLFTNIPMICTILQHTINFITHS*YTHLNITGTI*HTNSHSLRNTRTS*KHTLTHV- 413
NI++ + + T LQH + T S H +IT TI T+ +++ NT +T +
Sbjct: 144 NIVSRTHHYNITNTSLQHHEHITTTSRTHHEHIT-TISRTHHYNITNTSLQHHEHITTIS 202
Query: 412 -THSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 284
TH +H TIS HY +H E I S H + T
Sbjct: 203 RTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 244
Score = 34.7 bits (76), Expect = 0.069
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -2
Query: 550 TILQHTINFITHS*YTHLNITGTI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNI 377
T LQH + T S H +IT TI T+ +++ NT +T + TH +H TIS
Sbjct: 190 TSLQHHEHITTISRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRT 248
Query: 376 SHY 368
HY
Sbjct: 249 HHY 251
Score = 31.9 bits (69), Expect = 0.48
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Frame = -2
Query: 475 HTN----SHSLRNTRTS*KH----TLTHVTHSQHFNTISNISHYRFLGRLHGDRHSERIP 320
HTN +H T TS +H T T TH +H TIS HY +H E I
Sbjct: 142 HTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHITTISRTHHYNITNT--SLQHHEHIT 199
Query: 319 VCSDGHRGQLRT 284
S H + T
Sbjct: 200 TISRTHHEHITT 211
>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
Length = 225
Score = 38.7 bits (86), Expect = 0.004
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = -2
Query: 589 NILTLFTNIPMICTILQHTINFITHS*YTHLNITGTI*HTNSHSLRNTRTS*KHTLTHV- 413
NI++ + + T LQH + T S H +IT TI T+ +++ NT +T +
Sbjct: 77 NIVSRTHHYNITNTSLQHHEHITTTSRTHHEHIT-TISRTHHYNITNTSLQHHEHITTIS 135
Query: 412 -THSQHFNTISNISHYRFLGRLHGDRHSERIPVCSDGHRGQLRT 284
TH +H TIS HY +H E I S H + T
Sbjct: 136 RTHHEHITTISRTHHYNITNT--SLQHHEHITTISRTHHEHITT 177
Score = 34.7 bits (76), Expect = 0.069
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -2
Query: 550 TILQHTINFITHS*YTHLNITGTI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNI 377
T LQH + T S H +IT TI T+ +++ NT +T + TH +H TIS
Sbjct: 123 TSLQHHEHITTISRTHHEHIT-TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRT 181
Query: 376 SHY 368
HY
Sbjct: 182 HHY 184
Score = 31.9 bits (69), Expect = 0.48
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Frame = -2
Query: 475 HTN----SHSLRNTRTS*KH----TLTHVTHSQHFNTISNISHYRFLGRLHGDRHSERIP 320
HTN +H T TS +H T T TH +H TIS HY +H E I
Sbjct: 75 HTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHITTISRTHHYNITNT--SLQHHEHIT 132
Query: 319 VCSDGHRGQLRT 284
S H + T
Sbjct: 133 TISRTHHEHITT 144
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 35.9 bits (79), Expect = 0.030
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Frame = -2
Query: 631 THVEKTQIGMS*NHNILTLFTNIPMICTILQH---TINFITHS*YTHLNIT------GTI 479
TH T + ++ + + T++ + + L H T + ITHS THL +T T+
Sbjct: 33 THSNLTHLNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTL 92
Query: 478 *H-TNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISH 371
H T +HS T TLTH T + T SN++H
Sbjct: 93 THSTLTHSTLTHSTLTHSTLTHSTITHSTLTHSNLTH 129
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -2
Query: 535 TINFITHS*YTHLNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISH 371
T + +THS THLN+T + T ++S T TLTH+T + T S ++H
Sbjct: 28 THSTLTHSNLTHLNLTHS---TLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTH 79
>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1814
Score = 35.1 bits (77), Expect = 0.052
Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 2/135 (1%)
Frame = +3
Query: 186 YPWVLWSYLSTMTWYQRLSAT--ILQWRPSPDPGQVRSCPRCPSLHTGIRSECRSPCSRP 359
Y WV LS + S + I +W+ + G C S+ IR PC
Sbjct: 229 YAWVKTFKLSYAEYSDEWSYSGYIGRWKSYSEDGSTHKVRNCLSVRPSIRVSSVHPCIVC 288
Query: 360 KKR*CEILEIVLKCCECVTCVSVCFYDVRVLRSECEFVCYIVPVIFKCVYHECVIKFIVC 539
+ V C+ C SV VRV C C + P +++ ++ +
Sbjct: 289 PSV-YRVSVRVSSVHPCIVCPSVYRVSVRV---SCVRPCIVCPSVYRLSVRVSSVRPCIV 344
Query: 540 CNMVQIIGMLVKSVR 584
C V + + V SVR
Sbjct: 345 CPSVYRVSVRVSSVR 359
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Frame = +3
Query: 399 CCEC-VTCVS--VCFYDVRVLRSECEFVCYIVPVIFKCVYHECVIKFIVC--CNMV 551
CC C V C S V Y RV C VCY V+F C +VC C +V
Sbjct: 171 CCSCRVVCYSCRVVCYSCRVACCSCRVVCYSCRVVFCSCRVACCSCRVVCYSCRVV 226
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +3
Query: 399 CCEC-VTCVS--VCFYDVRVLRSECEFVCYIVPVIFKCVYHECVIKFIVC 539
CC C V C S V F RV C VCY V+ C +VC
Sbjct: 192 CCSCRVVCYSCRVVFCSCRVACCSCRVVCYSCRVVCYSCRVACCSCRVVC 241
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 186 KLISSQSGPQEYRFDGRGYAT-MAGRGYLTPQSNQVLLFFRTYAPNGLI 43
+++ ++ P+ Y FDG YA + + N V+L FRT PNGL+
Sbjct: 749 RILKRETDPEGY-FDGSAYAEYLLNDEKVDSNKNTVMLEFRTIQPNGLL 796
>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 31.9 bits (69), Expect = 0.48
Identities = 25/71 (35%), Positives = 38/71 (53%)
Frame = -2
Query: 550 TILQHTINFITHS*YTHLNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISH 371
T+L+ T +F HS ++ +I I H S +T S TL VTHS ++++ ++SH
Sbjct: 210 TLLRVTHSFRCHSLFSVSHIRFGITHP---SPCHTLVSVSLTLLGVTHSIRYHSLFSVSH 266
Query: 370 YRFLGRLHGDR 338
RF G H R
Sbjct: 267 TRF-GVTHSSR 276
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 544 LQHTINFITHS*YTHLNITGTI*HTN-SHSLR-NTRTS*KHTLTHVTHSQHFNTISNISH 371
+ HT +THS H ++ ++ +HS R ++ S HT +THS H +T+ ++ H
Sbjct: 264 VSHTRFGVTHSSRCHTLVSVSLTLLGVTHSFRCHSLFSVSHTRFVITHSSHCHTLVSVLH 323
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 147 FDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYILKAS 25
F G GY G +N++ L+FRT P+GLI L S
Sbjct: 1339 FPGNGYYKFPGSYVREGTTNEIELWFRTQYPDGLILFLSDS 1379
>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
Length = 236
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = -2
Query: 541 QHTINFITHS*YTHLNITGTI*HTNSHSLRNTR---TS*KHTLTHVTHSQHFNTISNISH 371
QH +++H+ L++TG H H+L TR + HTL HVT + T +
Sbjct: 89 QHVTRYMSHATCHTLHVTGNTSHATCHTLHVTRYMSHATCHTL-HVTGNTSHATCHTLHV 147
Query: 370 YRFLGRLHGDRHS 332
R++ H RH+
Sbjct: 148 TRYMS--HATRHT 158
>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
Length = 1214
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 427 CVFMMCACYEVSVSLCVI*CRLYLSACIMS 516
C F CA VS CV+ CR+ LS CI+S
Sbjct: 250 CAFFSCAVLYRVVSCCVVSCRV-LSCCIVS 278
>SB_34736| Best HMM Match : WCCH (HMM E-Value=6.7)
Length = 239
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 308 WTSGTAPNLARIRRG-SPLQDGCRQPLVPSH 219
W SGT R RR SPL+ CR+P P+H
Sbjct: 148 WQSGTESTERRKRRFVSPLRSSCRRPRGPTH 178
>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
Length = 422
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 279 GQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCEC 410
GQ +SC RC + G++ EC P RP +R E L + +C
Sbjct: 198 GQPQSCLRCSEIGHGVK-ECTKPRRRPHRRRREELTTEQERMQC 240
>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1399
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/63 (36%), Positives = 25/63 (39%)
Frame = -3
Query: 282 GQDPARVSIARWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYL 103
GQ ARVS P T K LT P L S PQ Y AT A RG++
Sbjct: 409 GQIRARVSGNALWPATCSQKRRLTAIYNMPYTVLFSLNPLPQPYPLPAIPSATKALRGHV 468
Query: 102 TPQ 94
Q
Sbjct: 469 VRQ 471
>SB_57004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.1 bits (62), Expect = 3.4
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Frame = -2
Query: 589 NILTLFTNIPMICTILQ-HTINFITHS*YTHLNITGTI*HTNSHSLRN----TRTS*KHT 425
N+ + +N CT H TH+ T + + HT++ L+ T+T
Sbjct: 34 NMHAMHSNTRTFCTQTHAHYALKHTHTLCTQTHAHNALKHTHAMHLKTCTLCTQTHAHFA 93
Query: 424 LTHVTHSQHFNT--ISNISH-YRFLGRLHGDRHSERIPVCSDGH 302
L H TH+ H NT + +H + L H HS + +C+ H
Sbjct: 94 LKH-THTMHSNTRTLCTQTHAHNALKHTHTTMHSNKRTLCTQTH 136
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 29.1 bits (62), Expect = 3.4
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = -2
Query: 604 MS*NHNILTLFTNIPMICTILQHTINFI-----THS*YTHLNITGTI*HTNSH--SLRNT 446
MS H+ FT + HT++F THS L T T+ HT+SH SL T
Sbjct: 230 MSIYHSHALSFTRTIIHTHSPSHTLSFTRTLIHTHSHSHALLFTRTLIHTHSHPHSLLFT 289
Query: 445 RTS*KHTLTHVTHS 404
RT TL H THS
Sbjct: 290 RTIIHTTLIH-THS 302
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 57 ERTCGRREALD*IEASNNLGQPSWHIHGHRTCTLEGQTARR 179
E CG+R D +NN+ Q S IHG+ TL+G R
Sbjct: 690 ECKCGQRHCGDKSNLTNNVCQFSHCIHGNCMVTLDGHRCAR 730
>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
Length = 293
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 475 HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYR 365
HT ++S +TR + H TH TH +T +N SH R
Sbjct: 170 HTRNNS-SHTRNNSSHGTTHRTHGTTHHTQNNSSHTR 205
>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
Length = 1290
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 4 LLRCFEDRRLENVYQAVRSVRAEEEKHLIRLRRQITS 114
L + E+R EN +A+ +R E E+ LIRL+ +ITS
Sbjct: 816 LAKIREEREQEN--KALAKIREEREQGLIRLQDEITS 850
>SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 563 TNDLYHITAYNKLYNALMIHALKYNRHYITH 471
T + H+T Y + + M H +Y RH +TH
Sbjct: 5 TRYMRHVTRYTRHFTRYMRHVTRYTRH-VTH 34
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 28.3 bits (60), Expect = 6.0
Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 16/117 (13%)
Frame = +3
Query: 285 VRSC-PRCPS-LHTGIRSECRSPCSRPKKR*CEILEIVLKCCECV-TCVSVCFYDVRVLR 455
VR C P C S +H +R SP P+ C + L C C+ C S VRVL
Sbjct: 1128 VRVCLPVCFSCVHLSVR--VLSPVC-PRVFTCLYACVNLSVCVCLPVCFSCVHLSVRVLS 1184
Query: 456 SECE------------FVCYIVPVIFKCVYHECVIKFIVCCNMVQIIGMLVK-SVRI 587
C VC +PV F CV+ ++ VC + V SVR+
Sbjct: 1185 PVCPRVFTCLYACVNLSVCVCLPVCFSCVHLSVRVRSPVCSRAFTCLSACVHLSVRV 1241
>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1227
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = -2
Query: 505 THLNITGTI*HTNSHSLRNT--RTS*---KHTLTHVTHSQHFNTISNISHYRFLGRLHGD 341
THL TI T H NT RT+ ++T+ TH +H NTI + +G +
Sbjct: 415 THLEHENTIPRTTHHEHENTIPRTTHHEHENTIPRTTHHEHENTIPR--RAKGVGIARDE 472
Query: 340 RHS 332
+HS
Sbjct: 473 KHS 475
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 454 RNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDRHSE 329
R T ++T+ TH +H NTI +H+ + H E
Sbjct: 413 RTTHLEHENTIPRTTHHEHENTIPRTTHHEHENTIPRTTHHE 454
>SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)
Length = 250
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 483 LYNTQTHTHFVTRAHHKNTH 424
+YN + HT + AHH NTH
Sbjct: 19 IYNNKCHTEKASIAHHLNTH 38
>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
Length = 1193
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = +3
Query: 150 CTLEGQTARRSIYPWVLWSYLS-----TMTWYQRLSATILQWRPSPDPGQVRS 293
CTL G SIYP+ + L M W ++ ++++ P P P RS
Sbjct: 427 CTLLGALVFNSIYPYSIRIGLKGLSFMVMAWLMLIAFILIEYVPPPPPPNPRS 479
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,831,907
Number of Sequences: 59808
Number of extensions: 576292
Number of successful extensions: 1635
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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