Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0355
         (671 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M96388-1|AAA28662.1| 3712|Drosophila melanogaster laminin A chai...    32   0.62 
M75882-1|AAA28661.1| 1951|Drosophila melanogaster laminin A chai...    32   0.62 
L07288-1|AAC37178.1| 3712|Drosophila melanogaster laminin A prot...    32   0.62 
AE014296-1101|AAF50672.2| 3712|Drosophila melanogaster CG10236-P...    32   0.62 
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    30   3.3  
BT025811-1|ABF85711.1|  237|Drosophila melanogaster IP01956p pro...    29   5.8  
AE013599-112|AAF57306.1|  237|Drosophila melanogaster CG14468-PA...    29   5.8  

>M96388-1|AAA28662.1| 3712|Drosophila melanogaster laminin A chain
            protein.
          Length = 3712

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -3

Query: 357  DDYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIARWLPTTA---GTKSSLTGNSTEPRD 187
            +D++ + I NGYP + +D+G+  E       V+  RW        G  + LT     P  
Sbjct: 2727 NDFVAVEIVNGYPILTIDLGNGPERITSDKYVADGRWYQAVVDRMGPNAKLTIREELPNG 2786

Query: 186  KLIS-SQSG 163
             ++  S+SG
Sbjct: 2787 DVVEHSKSG 2795


>M75882-1|AAA28661.1| 1951|Drosophila melanogaster laminin A chain
            protein.
          Length = 1951

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -3

Query: 357  DDYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIARWLPTTA---GTKSSLTGNSTEPRD 187
            +D++ + I NGYP + +D+G+  E       V+  RW        G  + LT     P  
Sbjct: 966  NDFVAVEIVNGYPILTIDLGNGPERITSDKYVADGRWYQAVVDRMGPNAKLTIREELPNG 1025

Query: 186  KLIS-SQSG 163
             ++  S+SG
Sbjct: 1026 DVVEHSKSG 1034


>L07288-1|AAC37178.1| 3712|Drosophila melanogaster laminin A protein.
          Length = 3712

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -3

Query: 357  DDYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIARWLPTTA---GTKSSLTGNSTEPRD 187
            +D++ + I NGYP + +D+G+  E       V+  RW        G  + LT     P  
Sbjct: 2727 NDFVAVEIVNGYPILTIDLGNGPERITSDKYVADGRWYQAVVDRMGPNAKLTIREELPNG 2786

Query: 186  KLIS-SQSG 163
             ++  S+SG
Sbjct: 2787 DVVEHSKSG 2795


>AE014296-1101|AAF50672.2| 3712|Drosophila melanogaster CG10236-PA
            protein.
          Length = 3712

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -3

Query: 357  DDYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIARWLPTTA---GTKSSLTGNSTEPRD 187
            +D++ + I NGYP + +D+G+  E       V+  RW        G  + LT     P  
Sbjct: 2727 NDFVAVEIVNGYPILTIDLGNGPERITSDKYVADGRWYQAVVDRMGPNAKLTIREELPNG 2786

Query: 186  KLIS-SQSG 163
             ++  S+SG
Sbjct: 2787 DVVEHSKSG 2795


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
 Frame = +3

Query: 264  PSPDPGQVR------SCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVS 425
            P+P+ G VR      +  +CPS H  I ++C  PC++     C + E   +C + V C  
Sbjct: 2118 PTPEQGCVRVPAPCLASNQCPSGHMCIGNQCNLPCTKTAS--CAVGE---RCYQQV-CRK 2171

Query: 426  VCFYDVRVLRSE 461
            VC+     L  E
Sbjct: 2172 VCYTSNNCLAGE 2183



 Score = 28.7 bits (61), Expect = 7.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 273  DPGQVRSCPRCPSLHTGIRSECRSPCSR 356
            DP +  S   CP+  +   S CRSPC R
Sbjct: 2434 DPNECLSDADCPASASCQNSRCRSPCER 2461


>BT025811-1|ABF85711.1|  237|Drosophila melanogaster IP01956p
           protein.
          Length = 237

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 66  CGRREALD*IEASNNLGQPSWHIHGHRTCTLEGQTARRSIYPWVL 200
           CGR   +D   AS+N   P     G + CT  G TA+ S Y W +
Sbjct: 143 CGRSSVVDYQTASSNRTWPIGSCCGKQNCT--GCTAKLSQYLWTI 185


>AE013599-112|AAF57306.1|  237|Drosophila melanogaster CG14468-PA
           protein.
          Length = 237

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 66  CGRREALD*IEASNNLGQPSWHIHGHRTCTLEGQTARRSIYPWVL 200
           CGR   +D   AS+N   P     G + CT  G TA+ S Y W +
Sbjct: 143 CGRSSVVDYQTASSNRTWPIGSCCGKQNCT--GCTAKLSQYLWTI 185


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,077,673
Number of Sequences: 53049
Number of extensions: 833797
Number of successful extensions: 2755
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2735
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)